Evidence map›Paper›PMID 36851635›Full record

ArticleViruses2023

Temporal Series Analysis of Population Cycle Threshold Counts as a Predictor of Surge in Cases and Hospitalizations during the SARS-CoV-2 Pandemic.

Fernando Cava, Jesús San Román, Pablo Barreiro, Francisco Javier Candel, Francisco Javier Álvarez-Timón, David Melero, Nerea Coya, Raquel Guillén, David Cantarero-Prieto, Javier Lera-Torres and 7 more

Abstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Fernando CavaDepartment of Clinical Chemistry, Synlab, 28036 Madrid, Spain.
Jesús San RománDepartment of Medical Specialties and Public Health, Universidad Rey Juan Carlos, 28922 Madrid, Spain.
Pablo BarreiroDepartment of Medical Specialties and Public Health, Universidad Rey Juan Carlos, 28922 Madrid, Spain.
Francisco Javier CandelUnit of Microbiology, Regional Laboratory of Public Health, Hospital Enfermera Isabel Zendal, 28055 Madrid, Spain.ORCID 0000-0002-9840-6556
Francisco Javier Álvarez-TimónUnit of Microbiology, Regional Laboratory of Public Health, Hospital Enfermera Isabel Zendal, 28055 Madrid, Spain.
David MeleroClinical Laboratory, Infanta Sofia University Hospital, UR Health, 28703 Madrid, Spain.ORCID 0000-0001-6686-4934
Nerea CoyaClinical Laboratory, Infanta Sofia University Hospital, UR Health, 28703 Madrid, Spain.ORCID 0000-0002-3132-4337
Raquel GuillénClinical Laboratory, Infanta Sofia University Hospital, UR Health, 28703 Madrid, Spain.ORCID 0000-0003-0714-5424
David Cantarero-PrietoHealth Economics Research Group, University of Cantabria and IDIVAL, 39005 Santander, Spain.
Javier Lera-TorresHealth Economics Research Group, University of Cantabria and IDIVAL, 39005 Santander, Spain.ORCID 0000-0002-0367-265X
Noelia Cobo-OrtizHealth Economics Research Group, University of Cantabria and IDIVAL, 39005 Santander, Spain.
Jesús CanoraDepartment of Internal Medicine, Hospital Universitario de Fuenlabrada, Universidad Rey Juan Carlos, 28922 Madrid, Spain.ORCID 0000-0002-5231-9721
Francisco Javier Martínez-PeromingoDepartment of Geriatrics, Hospital Universitario Rey Juan Carlos, Universidad Rey Juan Carlos, 28922 Madrid, Spain.ORCID 0000-0002-6456-8063
Raquel BarbaDepartment of Internal Medicine, Hospital Universitario Rey Juan Carlos, Universidad Rey Juan Carlos, 28922 Madrid, Spain.ORCID 0000-0002-1408-1441
María Del Mar CarreteroUnit of Microbiology, Regional Laboratory of Public Health, Hospital Enfermera Isabel Zendal, 28055 Madrid, Spain.
Juan Emilio LosaInfectious Diseases Unit, University Hospital Fundación Alcorcón, 28922 Madrid, Spain.ORCID 0000-0002-0750-0185
Antonio ZapateroDepartment of Internal Medicine, Hospital Universitario de Fuenlabrada, Universidad Rey Juan Carlos, 28922 Madrid, Spain.ORCID 0000-0003-1301-1289

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tools to predict surges in cases and hospitalizations during the COVID-19 pandemic may help guide public health decisions. Low cycle threshold (CT) counts may indicate greater SARS-CoV-2 concentrations in the respiratory tract, and thereby may be used as a surrogate marker of enhanced viral transmission. Several population studies have found an association between the oscillations in the mean CT over time and the evolution of the pandemic. For the first time, we applied temporal series analysis (Granger-type causality) to validate the CT counts as an epidemiological marker of forthcoming pandemic waves using samples and analyzing cases and hospital admissions during the third pandemic wave (October 2020 to May 2021) in Madrid. A total of 22,906 SARS-CoV-2 RT-PCR-positive nasopharyngeal swabs were evaluated; the mean CT value was 27.4 (SD: 2.1) (22.2% below 20 cycles). During this period, 422,110 cases and 36,727 hospital admissions were also recorded. A temporal association was found between the CT counts and the cases of COVID-19 with a lag of 9-10 days (

Indexed as

COVID-19SARS-CoV-2HospitalizationHumansPandemicsPublic HealthCOVID-19cycle thresholdhospitalizationspandemicRT-PCRSARS-CoV-2

Identifiers

PMID36851635
PMCPMC9959442

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.