Evidence map›Paper›PMID 36849618›Full record

ArticleNature plants2023

Structural and biochemical insight into a modular β-1,4-galactan synthase in plants.

Pradeep Kumar Prabhakar, Jose Henrique Pereira, Rahil Taujale, Wanchen Shao, Vivek S Bharadwaj, Digantkumar Chapla, Jeong-Yeh Yang, Yannick J Bomble, Kelley W Moremen, Natarajan Kannan and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Pradeep Kumar Prabhakar *Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Jose Henrique Pereira *Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Rahil TaujaleDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Wanchen ShaoJoint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Vivek S BharadwajRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.ORCID http://orcid.org/0000-0001-5851-9807
Digantkumar ChaplaComplex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.
Jeong-Yeh YangComplex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.
Yannick J BombleBiosciences Center, National Renewable Energy Laboratory, Golden, CO, USA.
Kelley W MoremenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0003-1768-582X
Natarajan KannanDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Michal HammelMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5610-9289
Paul D AdamsMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-9333-8219
Henrik V SchellerJoint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-6702-3560
Breeanna R UrbanowiczDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA. breeanna@uga.edu.ORCID http://orcid.org/0000-0001-5247-4513
Lawrence Berkeley National Laboratory · USUniversity of Georgia · USNational Laboratory of the Rockies · USOak Ridge National Laboratory · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Origin of N-Glycan Site-Specific HeterogeneityR01GM130915 · NIGMS · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN, MOREMEN, KELLEY W. · 2019 to 2022
$3.4M
Unlocking sequence-structure-function-disease relationships in large protein super-familiesR35GM139656 · NIGMS · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN · 2021 to 2025
$2.2M
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R01 GM130915NIGMS NIH HHS R35 GM139656US Department of Energy DE-AC02-05CH11231
6 · The paper itself

Abstract

Rhamnogalacturonan I (RGI) is a structurally complex pectic polysaccharide with a backbone of alternating rhamnose and galacturonic acid residues substituted with arabinan and galactan side chains. Galactan synthase 1 (GalS1) transfers galactose and arabinose to either extend or cap the β-1,4-galactan side chains of RGI, respectively. Here we report the structure of GalS1 from Populus trichocarpa, showing a modular protein consisting of an N-terminal domain that represents the founding member of a new family of carbohydrate-binding module, CBM95, and a C-terminal glycosyltransferase family 92 (GT92) catalytic domain that adopts a GT-A fold. GalS1 exists as a dimer in vitro, with stem domains interacting across the chains in a 'handshake' orientation that is essential for maintaining stability and activity. In addition to understanding the enzymatic mechanism of GalS1, we gained insight into the donor and acceptor substrate binding sites using deep evolutionary analysis, molecular simulations and biochemical studies. Combining all the results, a mechanism for GalS1 catalysis and a new model for pectic galactan side-chain addition are proposed.

Indexed as

GalactansGlycosyltransferasesGalactansGlycosyltransferases

Identifiers

PMID36849618
PMCPMC10115243
OpenAlexW4322493144

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.