Evidence map›Paper›PMID 36847733›Full record

ArticleJournal of animal science2023

Characteristics of the complete mitochondrial genome of Douhua chicken (Gallus gallus) and phylogenetic considerations.

Sihua Jin, Yuqing Jia, Lijun Jiang, Chengcheng Cao, Yunfei Ding, Taikang Zhang, Xuling Liu, Yongsheng Li, Zhaoyu Geng

Open access · greenAbstract read
In one paragraph

Article in Journal of animal science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sihua JinCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Yuqing JiaCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Lijun JiangCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Chengcheng CaoCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Yunfei DingCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Taikang ZhangCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Xuling LiuCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Yongsheng LiHuangshan Qiangying Duck Breeding Co. Ltd., Huanshan 245461, China.
Zhaoyu GengCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Anhui Agricultural University · CN

Funding

Guangdong Provincial key Laboratory of Animal Molecular Design and Precise Breeding 2019B01Jiangsu Provincial key Laboratory of Poultry Genetics and Breeding JQLAB-KF-202101Natural Science Foundation from Department of Anhui Provincial Education 2022AH050928Program for Young Outstanding Scientists of University gxyqZD2022017Quality Project of Department of Education of Anhui Province 2021jxjy026University-Industry Collaborative Education Program of Ministry of Education 221000488095409
6 · The paper itself

Abstract

Douhua chicken is a unique local breed from Anhui Province, China. This study aimed to illustrate the Douhua chicken mitogenome and clarify its phylogenetic status by sequencing and annotating the complete mitochondrial genome using high-throughput sequencing and primer walking. Phylogenetic analysis through the Kimura 2-parameter model indicated the maternal origin of Douhua chicken. The results revealed that the mitochondrial genome is a closed circular molecule (16,785 bp) that consists of 13 protein-coding genes, 22 transfer RNA (tRNA) coding genes, two ribosomal RNA (rRNA) coding genes, and a control region. The base composition of the Douhua chicken mitogenome contains 30.3% A, 23.7% T, 32.5% C, and 13.5% G, and the haplotype and nucleotide diversity values are 0.829 (Hd) and 0.00441 (Pi), respectively. Furthermore, 10 haplotypes of D-loop sequences among 60 Douhua chickens were identified and distributed into four haplogroups (A, C, D, and E). Overall, the result of the present study indicates that Douhua chicken may have originated from Gallus gallus, and this process was influenced by Gallus gallus spadiceus, Gallus gallus murghi, and Gallus gallus bankiva. This study provides novel mitogenome data to support further phylogenetic and taxonomic studies on Douhua chicken. Additionally, the findings of this study will provide deeper insights for identifying the genetic relationships among populations and tracing maternal origins based on phylogenetic considerations for use in studies on the geographic conservation, utilization, and molecular genetics of poultry species.

Indexed as

ChickensGenome, MitochondrialAnimalsBase CompositionDNA, MitochondrialPhylogenyRNA, TransferDNA, MitochondrialRNA, TransferD-loop regionDouhua chickenmaternal originmitochondrial genome

Identifiers

PMID36847733
PMCPMC10016196
OpenAlexW4322493111

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.