Evidence map›Paper›PMID 36847506›Full record

ArticleCancer discovery2023

(R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers.

Kathryn Gunn, Matti Myllykoski, John Z Cao, Manna Ahmed, Bofu Huang, Betty Rouaisnel, Bill H Diplas, Michael M Levitt, Ryan Looper, John G Doench and 8 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 2 countries.

Kathryn GunnDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0003-1515-7898
Matti MyllykoskiBiocenter Oulu, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland; Oulu Center for Cell-Matrix Research, University of Oulu, Oulu, Finland.ORCID 0000-0001-6641-5856
John Z CaoCommittee on Cancer Biology, Biological Sciences Division, University of Chicago, Chicago, Illinois.ORCID 0000-0001-7561-235X
Manna AhmedCancer Signaling and Epigenetics Program, Cancer Epigenetic Institute, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0003-4555-988X
Bofu HuangDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0001-5855-2180
Betty RouaisnelDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0002-5377-4187
Bill H DiplasDepartment of Pathology, Duke University Medical Center, Durham, North Carolina.ORCID 0000-0001-9248-7351
Michael M LevittChildren's Medical Center Research Institute and Department of Pediatrics, The University of Texas Southwestern Medical Center, Dallas, Texas.ORCID 0000-0002-8359-1760
Ryan LooperDepartment of Chemistry, University of Utah, Salt Lake City, Utah.ORCID 0000-0003-1626-1363
John G DoenchBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-3707-9889
Keith L LigonBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-7733-600X
Harley I KornblumIntellectual and Developmental Disabilities Research Center, David Geffen School of Medicine at UCLA, Los Angeles, California.ORCID 0000-0002-3779-4540
Samuel K McBrayerChildren's Medical Center Research Institute and Department of Pediatrics, The University of Texas Southwestern Medical Center, Dallas, Texas.ORCID 0000-0001-9361-675X
Hai YanDepartment of Pathology, Duke University Medical Center, Durham, North Carolina.ORCID 0000-0001-9509-8431
Cihangir DuyCancer Signaling and Epigenetics Program, Cancer Epigenetic Institute, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0001-9150-9379
Lucy A GodleyCommittee on Cancer Biology, Biological Sciences Division, University of Chicago, Chicago, Illinois.ORCID 0000-0003-1914-9158
Peppi KoivunenBiocenter Oulu, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland; Oulu Center for Cell-Matrix Research, University of Oulu, Oulu, Finland.ORCID 0000-0002-2827-8229
Julie-Aurore LosmanDivision of Molecular and Cellular Oncology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0002-3790-2660
Dana-Farber Cancer Institute · USBroad Institute · USDuke University · USFox Chase Cancer Center · USThe University of Texas Southwestern Medical Center · USUniversity of Chicago · USUniversity of Oulu · FIBrigham and Women's Hospital · USUniversity of California, Los Angeles · USUniversity of Utah · US

Funding

Targeting the Vasular SystemP50CA165962 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WENDY Beth LONDON · 2013 to 2026
$33.5M
UCLA SPORE in Brain CancerP50CA211015 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Yvonne Yu-Hsuan Chen · 2017 to 2026
$25.2M
UCLA IDDRC: Translational CoreP50HD103557 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUSAN Y BOOKHEIMER · 2020 to 2026
$9.6M
Genetic evolution of glioblastomas during radiation and temozolomide therapyR01CA188228 · NCI · DANA-FARBER CANCER INST · PI BEROUKHIM, RAMEEN, CHAKRAVARTI, ARNAB · 2015 to 2025
$6.9M
Medical Scientist Training Program Training GrantT32GM145449 · NIGMS · DUKE UNIVERSITY · PI Christopher D Kontos · 2022 to 2026
$6.6M
Radiation-induced vascular reprogramming in glioblastomaR01NS121617 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HARLEY IAN KORNBLUM · 2022 to 2026
$2.3M
KDM5 histone lysine demethylases as potential novel myeloid tumor suppressorsR01CA227640 · NCI · DANA-FARBER CANCER INST · PI LOSMAN, JULIE-AURORE · 2018 to 2022
$1.9M
Development of Selective Ribosomal P-site InhibitorsR01AI127724 · NIAID · UNIVERSITY OF UTAH · PI LOOPER, RYAN EDWARD · 2017 to 2020
$1.5M
NCI NIH HHS P50 CA165962NCI NIH HHS P50 CA211015NCI NIH HHS R01 CA188228NCI NIH HHS R01 CA227640NIAID NIH HHS R01 AI127724NIGMS NIH HHS T32 GM145449NINDS NIH HHS R01 NS121617
6 · The paper itself

Abstract

Oncogenic mutations in isocitrate dehydrogenase 1 (IDH1) and IDH2 occur in a wide range of cancers, including acute myeloid leukemia (AML) and glioma. Mutant IDH enzymes convert 2-oxoglutarate (2OG) to (R)-2-hydroxyglutarate [(R)-2HG], an oncometabolite that is hypothesized to promote cellular transformation by dysregulating 2OG-dependent enzymes. The only (R)-2HG target that has been convincingly shown to contribute to transformation by mutant IDH is the myeloid tumor suppressor TET2. However, there is ample evidence to suggest that (R)-2HG has other functionally relevant targets in IDH-mutant cancers. Here, we show that (R)-2HG inhibits KDM5 histone lysine demethylases and that this inhibition contributes to cellular transformation in IDH-mutant AML and IDH-mutant glioma. These studies provide the first evidence of a functional link between dysregulation of histone lysine methylation and transformation in IDH-mutant cancers. SIGNIFICANCE: Mutant IDH is known to induce histone hypermethylation. However, it is not known if this hypermethylation is functionally significant or is a bystander effect of (R)-2HG accumulation in IDH-mutant cells. Here, we provide evidence that KDM5 inhibition by (R)-2HG contributes to mutant IDH-mediated transformation in AML and glioma. This article is highlighted in the In This Issue feature, p. 1275.

Indexed as

GliomaLeukemia, Myeloid, AcuteCell Transformation, NeoplasticDNA MethylationGlutaratesHistone DemethylasesHistonesHumansIsocitrate DehydrogenaseMutationalpha-hydroxyglutarateGlutaratesHistone DemethylasesHistonesIsocitrate Dehydrogenase

Identifiers

PMID36847506
PMCPMC10238656
OpenAlexW4322494010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.