Evidence map›Paper›PMID 36844226›Full record

ArticleFrontiers in medicine2023

Metagenomic next-generation sequencing for the etiological diagnosis of rabies virus in cerebrospinal fluid.

Yong Liu, Xichao Mo, Ye Feng, Rodney E Willoughby, Xing Weng, Yuyang Wang, Xing Li, Junling Gao, Jinfei Tian, Jie Peng

Abstract read
In one paragraph

Article in Frontiers in medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yong LiuIntensive Care Unit, Shenzhen Hospital, Southern Medical University, Shenzhen, Guangdong, China.
Xichao MoDepartment of Infectious Diseases, Nanfang Hospital of Southern Medical University, Guangzhou, Guangdong, China.
Ye FengChangchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, Jilin, China.
Rodney E WilloughbyDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, MI, United States.
Xing WengDepartment of Infectious Disease, BGI-Shenzhen, Shenzhen, Guangdong, China.
Yuyang WangChangchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, Jilin, China.
Xing LiDepartment of Infectious Disease, BGI-Shenzhen, Shenzhen, Guangdong, China.
Junling GaoCentre of Buddhists Studies, The University of Hong Kong, Hong Kong, Hong Kong SAR, China.
Jinfei TianIntensive Care Unit, Shenzhen Hospital, Southern Medical University, Shenzhen, Guangdong, China.
Jie PengDepartment of Infectious Diseases, Nanfang Hospital of Southern Medical University, Guangzhou, Guangdong, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Rabies is a highly fatal disease. Once symptoms develop, death usually occurs within days. Survivors were occasionally reported in the literatures. Ante-mortem diagnosis remains a challenge in most rabies endemic countries. A novel, accurate diagnostic assay is highly desirable. Methods: We used metagenomic next-generation sequencing (mNGS) to examine the cerebrospinal fluid (CSF) samples of a 49-year-old patient with rabies and validated the results by TaqMan PCR and RT-PCR/Sanger sequencing. Results: Metagenomic next-generation sequencing identified sequence reads uniquely aligned to the rabies virus (RABV). PCR confirmed the presence of the partial RABV N gene in the CSF. Phylogenetic analysis showed that the RABV grouped as an Asian clade, which is the most broadly distributed clade in China. Conclusion: Metagenomic next-generation sequencing may be a useful screening tool for the etiological diagnosis of rabies, especially in the absence of timely rabies laboratory testing or in patients with no exposure history.

Indexed as

cerebrospinal fluiddiagnosismetagenomic next-generation sequencingrabiesrabies virus

Identifiers

PMID36844226
PMCPMC9947348

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.