Evidence map›Paper›PMID 36844076›Full record

ArticleFrontiers in plant science2023

Whole-genome re-sequencing, diversity analysis, and stress-resistance analysis of 77 grape rootstock genotypes.

Peipei Wang, Fanggui Zhao, Ting Zheng, Zhongjie Liu, Xinglong Ji, Zhichang Zhang, Tariq Pervaiz, Lingfei Shangguan, Jinggui Fang

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Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Peipei WangCollege of Horticulture, Qingdao Agricultural University, Qingdao, China.
Fanggui ZhaoCollege of Horticulture, Qingdao Agricultural University, Qingdao, China.
Ting ZhengCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Zhongjie LiuCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Xinglong JiCollege of Horticulture, Qingdao Agricultural University, Qingdao, China.
Zhichang ZhangShandong Zhichang Agricultural Science and Technology Development Co. LTD, Rizhao, China.
Tariq PervaizDepartment of Botany and Plant Sciences, University of California Riverside, Riverside, CA, United States.
Lingfei ShangguanCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Jinggui FangCollege of Horticulture, Qingdao Agricultural University, Qingdao, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Grape rootstocks play critical role in the development of the grape industry over the globe for their higher adaptability to various environments, and the evaluation of their genetic diversity among grape genotypes is necessary to the conservation and utility of genotypes. Methods: To analyze the genetic diversity of grape rootstocks for a better understanding multiple resistance traits, whole-genome re-sequencing of 77 common grape rootstock germplasms was conducted in the present study. Results: About 645 billion genome sequencing data were generated from the 77 grape rootstocks at an average depth of ~15.5×, based on which the phylogenic clusters were generated and the domestication of grapevine rootstocks was explored. The results indicated that the 77 rootstocks originated from five ancestral components. Through phylogenetic, principal components, and identity-by-descent (IBD) analyses, these 77 grape rootstocks were assembled into ten groups. It is noticed that the wild resources of Discussion: This study generated a significant amount of genomic data from grape rootstocks, thus providing a theoretical basis for further research on the resistance mechanism of grape rootstocks and the breeding of resistant varieties. These findings also reveal that China originated

Indexed as

genetic diversitygrapevineresequencingrootstocksstress-resistance

Identifiers

PMID36844076
PMCPMC9947647

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