Evidence map›Paper›PMID 36843848›Full record

ArticleiScience2023

DNA methylation-based profiling of horse archaeological remains for age-at-death and castration.

Xuexue Liu, Andaine Seguin-Orlando, Lorelei Chauvey, Gaëtan Tressières, Stéphanie Schiavinato, Laure Tonasso-Calvière, Jean-Marc Aury, Aude Perdereau, Stefanie Wagner, Pierre Clavel and 13 more

Abstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A genetic window into the human social past.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Xuexue LiuCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Andaine Seguin-OrlandoCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Lorelei ChauveyCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Gaëtan TressièresCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Stéphanie SchiavinatoCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Laure Tonasso-CalvièreCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Jean-Marc AuryGenoscope, Institut de biologie François Jacob, CEA, Université d'Évry, Université Paris-Saclay, 91042 Évry, France.
Aude PerdereauGenoscope, Institut de biologie François Jacob, CEA, Université d'Évry, Université Paris-Saclay, 91042 Évry, France.
Stefanie WagnerCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Pierre ClavelCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Oscar EstradaCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Jianfei PanLaboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, P. R. China.
Yuehui MaLaboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, P. R. China.
Jacob EnkDaicel Arbor Biosicences, Ann Arbor, MI, USA.
Alison DevaultDaicel Arbor Biosicences, Ann Arbor, MI, USA.
Jennifer KlunkDaicel Arbor Biosicences, Ann Arbor, MI, USA.
Sébastien LepetzArchéozoologie, Archéobotanique: sociétés, pratiques et environnements (AASPE), Muséum National d'Histoire Naturelle, CNRS, CP 56, 55 Rue Buffon, 75005 Paris, France.
Benoit ClavelArchéozoologie, Archéobotanique: sociétés, pratiques et environnements (AASPE), Muséum National d'Histoire Naturelle, CNRS, CP 56, 55 Rue Buffon, 75005 Paris, France.
Lin JiangLaboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, P. R. China.
Patrick WinckerGenoscope, Institut de biologie François Jacob, CEA, Université d'Évry, Université Paris-Saclay, 91042 Évry, France.
Yvette Running Horse CollinCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Clio Der SarkissianCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.
Ludovic OrlandoCentre d'Anthropobiologie et de Génomique de Toulouse, CNRS UMR5288, Université Paul Sabatier, 31000 Toulouse, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Age profiling of archaeological bone assemblages can inform on past animal management practices, but is limited by the fragmentary nature of the fossil record and the lack of universal skeletal markers for age. DNA methylation clocks offer new, albeit challenging, alternatives for estimating the age-at-death of ancient individuals. Here, we take advantage of the availability of a DNA methylation clock based on 31,836 CpG sites and dental age markers in horses to assess age predictions in 84 ancient remains. We evaluate our approach using whole-genome sequencing data and develop a capture assay providing reliable estimates for only a fraction of the cost. We also leverage DNA methylation patterns to assess castration practice in the past. Our work opens for a deeper characterization of past husbandry and ritual practices and holds the potential to reveal age mortality profiles in ancient societies, once extended to human remains.

Indexed as

Molecular genetics

Identifiers

PMID36843848
PMCPMC9950528

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.