Evidence map›Paper›PMID 36842155›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2023

A Cre-LoxP-based approach for combinatorial chromosome rearrangements in human HAP1 cells.

Anna Khabarova, Galina Koksharova, Pavel Salnikov, Polina Belokopytova, Roman Mungalov, Inna Pristyazhnuk, Artem Nurislamov, Maria Gridina, Veniamin Fishman

Abstract read
PubMed Publisher
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Anna KhabarovaInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0002-9425-9763
Galina KoksharovaInstitute of Cytology and Genetics, Novosibirsk, Russia. g.koksharova@g.nsu.ru.ORCID 0000-0001-5664-492X
Pavel SalnikovInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0001-9470-7178
Polina BelokopytovaInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0003-1390-7341
Roman MungalovInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0001-6321-3917
Inna PristyazhnukInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0003-0226-4213
Artem NurislamovInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0002-0553-1316
Maria GridinaInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0002-7972-5949
Veniamin FishmanInstitute of Cytology and Genetics, Novosibirsk, Russia.ORCID 0000-0002-5573-3100

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alterations of human karyotype caused by chromosomal rearrangements are often associated with considerable phenotypic effects. Studying molecular mechanisms underlying these effects requires an efficient and scalable experimental model. Here, we propose a Cre-LoxP-based approach for the generation of combinatorial diversity of chromosomal rearrangements. We demonstrate that using the developed system, both intra- and inter-chromosomal rearrangements can be induced in the human haploid HAP1 cells, although the latter is significantly less effective. The obtained genetically modified HAP1 cell line can be used to dissect genomic effects associated with intra-chromosomal structural variations.

Indexed as

ChromosomesGene RearrangementRecombination, GeneticCell LineHumansIntegrasesNerve Tissue ProteinsCre recombinaseHAP1 protein, humanIntegrasesNerve Tissue ProteinsCell line modelsChromosome rearrangementCre/LoxP systemGenome editing

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.