Evidence map›Paper›PMID 36842142›Full record

ArticleAging2023

Comprehensive landscape of immune-based classifier related to early diagnosis and macrophage M1 in spinal cord injury.

Zhao Zhang, Zhijie Zhu, Xuankang Wang, Dong Liu, Xincheng Liu, Zhenzhou Mi, Huiren Tao, Hongbin Fan

Open access · hybridFull text read
In one paragraph

Article in Aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zhao ZhangDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Zhijie ZhuDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Xuankang WangDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Dong LiuDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Xincheng LiuDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Zhenzhou MiDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Huiren TaoDepartment of Orthopaedics, Shenzhen University General Hospital, Shenzhen 518052, China.
Hongbin FanDepartment of Orthopaedics, Xi-Jing Hospital, The Fourth Military Medical University, Xi’an 710032, China.
Air Force Medical University · CNShenzhen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Numerous studies have documented that immune responses are crucial in the pathophysiology of spinal cord injury (SCI). Our study aimed to uncover the function of immune-related genes (IRGs) in SCI. Here, we comprehensively evaluated the transcriptome data of SCI and healthy controls (HC) obtained from the GEO Database integrating bioinformatics and experiments. First, a total of 2067 DEGs were identified between the SCI and HC groups. Functional enrichment analysis revealed substantial immune-related pathways and functions that were abnormally activated in the SCI group. Immune analysis revealed that myeloid immune cells were predominantly upregulated in SCI patients, while a large number of lymphoid immune cells were dramatically downregulated. Subsequently, 51 major IRGs were screened as key genes involved in SCI based on the intersection of the results of WGCNA analysis, DEGs, and IRGs. Based on the expression profiles of these genes, two distinct immune modulation patterns were recognized exhibiting opposite immune characteristics. Moreover, 2 core IRGs (FCER1G and NFATC2) were determined to accurately predict the occurrence of SCI via machine learning. qPCR analysis was used to validate the expression of core IRGs in an external independent cohort. Finally, the expression of these core IRGs was validated by sequencing, WB, and IF analysis

Indexed as

Spinal Cord InjuriesComputational BiologyEarly DiagnosisHumansMacrophagesTranscriptomediagnosisimmunemachine learningmacrophagespinal cord injury

Identifiers

PMID36842142
PMCPMC10008498
OpenAlexW4321607192

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read18
table measurements read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.