Evidence map›Paper›PMID 36842087›Full record

ArticleCell reports2023

Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast.

Elizabeth X Kwan, Gina M Alvino, Kelsey L Lynch, Paula F Levan, Haley M Amemiya, Xiaobin S Wang, Sarah A Johnson, Joseph C Sanchez, Madison A Miller, Mackenzie Croy and 7 more

Abstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. T2T genomes ofGenome research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Elizabeth X KwanDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Gina M AlvinoDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Kelsey L LynchDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Paula F LevanDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Haley M AmemiyaDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Xiaobin S WangDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Sarah A JohnsonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Joseph C SanchezDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Madison A MillerDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Mackenzie CroyDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Seung-Been LeeDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Maria NaushabDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Antonio BedalovClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Josh T CuperusDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Bonita J BrewerDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Christine QueitschDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address: queitsch@uw.edu.
M K RaghuramanDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address: raghu@uw.edu.

Funding

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Technology to understand genetic variant effects in contextRM1HG010461 · NHGRI · UNIVERSITY OF WASHINGTON · PI Douglas M Fowler, Bruce Colston Trapnell · 2019 to 2026
$18.9M
Choreography of Eukaryotic DNA ReplicationR35GM122497 · NIGMS · UNIVERSITY OF WASHINGTON · PI BONITA J BREWER · 2017 to 2026
$5.7M
Origin firing at repetitive sequences and genome replication - Admin SupplementR01GM117446 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BEDALOV, ANTONIO · 2016 to 2023
$4.3M
Understanding gene regulation in contextR35GM139532 · NIGMS · UNIVERSITY OF WASHINGTON · PI Christine Queitsch · 2021 to 2026
$3.3M
Autophagy Regulation by Hippo Kinases STK3/STK4R01GM117466 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI HANSEN, MALENE · 2016 to 2019
$1.5M
Ribosomal DNA copy number variation as a source of missing heritability in complex traitsR01GM122088 · NIGMS · UNIVERSITY OF WASHINGTON · PI QUEITSCH, CHRISTINE · 2017 to 2019
$1.4M
NHGRI NIH HHS RM1 HG010461NHGRI NIH HHS T32 HG000035NIGMS NIH HHS R01 GM117446NIGMS NIH HHS R01 GM117466NIGMS NIH HHS R01 GM122088NIGMS NIH HHS R35 GM122497NIGMS NIH HHS R35 GM139532
6 · The paper itself

Abstract

Timely completion of genome replication is a prerequisite for mitosis, genome integrity, and cell survival. A challenge to this timely completion comes from the need to replicate the hundreds of untranscribed copies of rDNA that organisms maintain in addition to the copies required for ribosome biogenesis. Replication of these rDNA arrays is relegated to late S phase despite their large size, repetitive nature, and essentiality. Here, we show that, in Saccharomyces cerevisiae, reducing the number of rDNA repeats leads to early rDNA replication, which results in delaying replication elsewhere in the genome. Moreover, cells with early-replicating rDNA arrays and delayed genome-wide replication aberrantly release the mitotic phosphatase Cdc14 from the nucleolus and enter anaphase prematurely. We propose that rDNA copy number determines the replication time of the rDNA locus and that the release of Cdc14 upon completion of rDNA replication is a signal for cell cycle progression.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAnaphaseCell Cycle ProteinsDNA-Binding ProteinsDNA ReplicationDNA, RibosomalProtein Tyrosine PhosphatasesRibosomesVirus ReplicationCDC14 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding ProteinsDNA, RibosomalProtein Tyrosine PhosphatasesSaccharomyces cerevisiae ProteinsanaphaseCdc14cell cyclecopy number variationCP: Molecular biologyFob1nucleolusorigin of replicationrDNAreplication timingribosomal DNA

Identifiers

PMID36842087
PMCPMC10142053

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.