Evidence map›Paper›PMID 36841898›Full record

ArticleScientific reports2023

Radiogenomic classification for MGMT promoter methylation status using multi-omics fused feature space for least invasive diagnosis through mpMRI scans.

Shahzad Ahmad Qureshi, Lal Hussain, Usama Ibrar, Eatedal Alabdulkreem, Mohamed K Nour, Mohammed S Alqahtani, Faisal Mohammed Nafie, Abdullah Mohamed, Gouse Pasha Mohammed, Tim Q Duong

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 72 citations in OpenAlex.

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  17. Correlations ofMolecular and clinical oncology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 10 institutions in 4 countries.

Shahzad Ahmad QureshiDepartment of Computer and Information Sciences, Pakistan Institute of Engineering and Applied Sciences, Islamabad, Pakistan. drsaqureshi@pieas.edu.pk.
Lal HussainDepartment of Computer Science and IT, Neelum Campus, The University of Azad Jammu and Kashmir, Muzaffarabad, Azad Kashmir, Pakistan. lall_hussain2008@live.com.
Usama IbrarFarooq Hospital, Lahore, Pakistan.
Eatedal AlabdulkreemDepartment of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671, Saudi Arabia.
Mohamed K NourDepartment of Computer Sciences, College of Computing and Information System, Umm Al-Qura University, Mecca, Saudi Arabia.
Mohammed S AlqahtaniRadiological Sciences Department, College of Applied Medical Sciences, King Khalid University, Abha, 61421, Saudi Arabia.
Faisal Mohammed NafieDepartment of Computer Science, College of Science and Humanities at Alghat, Majmaah University, Al-Majmaah, 11952, Saudi Arabia.
Abdullah MohamedResearch Centre, Future University in Egypt, New Cairo, 11845, Egypt.
Gouse Pasha MohammedDepartment of Computer and Self Development, Preparatory Year Deanship, Prince Sattam Bin Abdulaziz University, AlKharj, Saudi Arabia.
Tim Q DuongDepartment of Radiology, Albert Einstein College of Medicine and Montefiore Medical Center, 111 East 210th Street, Bronx, NY, 10467, USA.
Albert Einstein College of Medicine · USFarooq Hospital · PKFuture University in Egypt · EGKing Khalid University · SAMajmaah University · SAPakistan Institute of Engineering and Applied Sciences · PKPrince Sattam Bin Abdulaziz University · SAPrincess Nourah bint Abdulrahman University · SAUmm al-Qura University · SAUniversity of Azad Jammu and Kashmir · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate radiogenomic classification of brain tumors is important to improve the standard of diagnosis, prognosis, and treatment planning for patients with glioblastoma. In this study, we propose a novel two-stage MGMT Promoter Methylation Prediction (MGMT-PMP) system that extracts latent features fused with radiomic features predicting the genetic subtype of glioblastoma. A novel fine-tuned deep learning architecture, namely Deep Learning Radiomic Feature Extraction (DLRFE) module, is proposed for latent feature extraction that fuses the quantitative knowledge to the spatial distribution and the size of tumorous structure through radiomic features: (GLCM, HOG, and LBP). The application of the novice rejection algorithm has been found significantly effective in selecting and isolating the negative training instances out of the original dataset. The fused feature vectors are then used for training and testing by k-NN and SVM classifiers. The 2021 RSNA Brain Tumor challenge dataset (BraTS-2021) consists of four structural mpMRIs, viz. fluid-attenuated inversion-recovery, T1-weighted, T1-weighted contrast enhancement, and T2-weighted. We evaluated the classification performance, for the very first time in published form, in terms of measures like accuracy, F

Indexed as

Brain NeoplasmsGlioblastomaMultiparametric Magnetic Resonance ImagingDNA MethylationDNA Modification MethylasesDNA Repair EnzymesHumansMagnetic Resonance ImagingMultiomicsRetrospective StudiesTumor Suppressor ProteinsDNA Modification MethylasesDNA Repair EnzymesMGMT protein, humanTumor Suppressor Proteins

Identifiers

PMID36841898
PMCPMC9961309
OpenAlexW4321851617

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.