Evidence map›Paper›PMID 36841829›Full record

ArticleNature communications2023

Structural consequences of turnover-induced homocitrate loss in nitrogenase.

Rebeccah A Warmack, Ailiena O Maggiolo, Andres Orta, Belinda B Wenke, James B Howard, Douglas C Rees

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
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  8. Article
  9. The nitrogenase mechanism: new roles for the dangler?Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2025
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Structural insights into the iron nitrogenase complex.Nature structural & molecular biology · 2024
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Rebeccah A WarmackDivision of Chemistry and Chemical Engineering 147-75, California Institute of Technology, Pasadena, CA, 91125, USA. rwarmack@caltech.edu.ORCID http://orcid.org/0000-0002-9612-0511
Ailiena O MaggioloDivision of Chemistry and Chemical Engineering 147-75, California Institute of Technology, Pasadena, CA, 91125, USA.ORCID http://orcid.org/0000-0003-1707-5060
Andres OrtaBiochemistry and Molecular Biophysics Graduate Program, California Institute of Technology, Pasadena, CA, 91125, USA.ORCID http://orcid.org/0000-0003-0673-1413
Belinda B WenkeDivision of Chemistry and Chemical Engineering 147-75, California Institute of Technology, Pasadena, CA, 91125, USA.
James B HowardDepartment of Biochemistry, University of Minnesota, Minneapolis, MN, 55455, USA.
Douglas C ReesDivision of Chemistry and Chemical Engineering 147-75, California Institute of Technology, Pasadena, CA, 91125, USA. dcrees@caltech.edu.ORCID http://orcid.org/0000-0003-4073-1185
California Institute of Technology · USUniversity of Minnesota · US

Funding

Crystallographic Studies of Electron Tranfer ProteinsR37GM045162 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI REES, DOUGLAS CHARLES · 2003 to 2012
$3.1M
CRYSTALLOGRAPHIC STUDIES OF ELECTRON TRANSFER PROTEINSR01GM045162 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI REES, DOUGLAS CHARLES · 1991 to 2018
$2.2M
Atomic Models of Nitrogen Fixation by Nitrogenase from CryoEM StructuresF32GM143836 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI WARMACK, REBECCAH · 2021 to 2022
$136k
NIGMS NIH HHS F32 GM143836NIGMS NIH HHS R01 GM045162NIGMS NIH HHS R37 GM045162
6 · The paper itself

Abstract

Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen to ammonia during the process of biological nitrogen fixation that is essential for sustaining life. The active site FeMo-cofactor contains a [7Fe:1Mo:9S:1C] metallocluster coordinated with an R-homocitrate (HCA) molecule. Here, we establish through single particle cryoEM and chemical analysis of two forms of the Azotobacter vinelandii MoFe-protein - a high pH turnover inactivated species and a ∆NifV variant that cannot synthesize HCA - that loss of HCA is coupled to α-subunit domain and FeMo-cofactor disordering, and formation of a histidine coordination site. We further find a population of the ∆NifV variant complexed to an endogenous protein identified through structural and proteomic approaches as the uncharacterized protein NafT. Recognition by endogenous NafT demonstrates the physiological relevance of the HCA-compromised form, perhaps for cofactor insertion or repair. Our results point towards a dynamic active site in which HCA plays a role in enabling nitrogenase catalysis by facilitating activation of the FeMo-cofactor from a relatively stable form to a state capable of reducing dinitrogen under ambient conditions.

Indexed as

Azotobacter vinelandiiNitrogenaseMolybdoferredoxinProteomicsTricarboxylic Acidshomocitric acidMolybdoferredoxinNitrogenaseTricarboxylic Acids

Identifiers

PMID36841829
PMCPMC9968304
OpenAlexW4321851546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.