Evidence map›Paper›PMID 36841804›Full record

ArticleNature communications2023

A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.

Michael W Martynowycz, Anna Shiriaeva, Max T B Clabbers, William J Nicolas, Sara J Weaver, Johan Hattne, Tamir Gonen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Membrane protein structure and dynamics probed by MicroED.Biochemical Society transactions · 2026
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  19. Applying 3D ED/MicroED workflows toward the next frontiers.Acta crystallographica. Section C, Structural chemistry · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Michael W MartynowyczHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA.
Anna ShiriaevaHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0002-4082-7884
Max T B ClabbersHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0002-5466-6508
William J NicolasHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA.
Sara J WeaverHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA.
Johan HattneHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0002-8936-0912
Tamir GonenHoward Hughes Medical Institute, University of California, Los Angeles, CA, 90095, USA. tgonen@g.ucla.edu.ORCID http://orcid.org/0000-0002-9254-4069
Howard Hughes Medical Institute · US

Funding

TRD4: Design and Engineering of MicroED hardware for nanocrystallization and time resolved studiesP41GM136508 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GONEN, TAMIR, NANNENGA, BRENT · 2020 to 2024
$7.6M
NIGMS NIH HHS P41 GM136508
6 · The paper itself

Abstract

Crystallizing G protein-coupled receptors (GPCRs) in lipidic cubic phase (LCP) often yields crystals suited for the cryogenic electron microscopy (cryoEM) method microcrystal electron diffraction (MicroED). However, sample preparation is challenging. Embedded crystals cannot be targeted topologically. Here, we use an integrated fluorescence light microscope (iFLM) inside of a focused ion beam and scanning electron microscope (FIB-SEM) to identify fluorescently labeled GPCR crystals. Crystals are targeted using the iFLM and LCP is milled using a plasma focused ion beam (pFIB). The optimal ion source for preparing biological lamellae is identified using standard crystals of proteinase K. Lamellae prepared using either argon or xenon produced the highest quality data and structures. MicroED data are collected from the milled lamellae and the structures are determined. This study outlines a robust approach to identify and mill membrane protein crystals for MicroED and demonstrates plasma ion-beam milling is a powerful tool for preparing biological lamellae.

Indexed as

ElectronsMembrane ProteinsCryoelectron MicroscopyEndopeptidase KLipidsEndopeptidase KLipidsMembrane Proteins

Identifiers

PMID36841804
PMCPMC9968316
OpenAlexW4321850675

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.