Evidence map›Paper›PMID 36840776›Full record

ArticleWorld journal of microbiology & biotechnology2023

Expression profiling of Clostridium thermocellum B8 during the deconstruction of sugarcane bagasse and straw.

Brenda Rabello de Camargo, Andrei Stecca Steindorff, Leonardo Assis da Silva, Athos Silva de Oliveira, Pedro Ricardo Vieira Hamann, Eliane Ferreira Noronha

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Brenda Rabello de CamargoLaboratory of Enzymology, Department of Cell Biology, University of Brasília, Brasilia, DF, 70910-900, Brazil.
Andrei Stecca SteindorffUS DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Leonardo Assis da SilvaLaboratory of Virology, Department of Cell Biology, University of Brasília, Brasília, DF, Brazil.
Athos Silva de OliveiraLaboratory of Virology, Department of Cell Biology, University of Brasília, Brasília, DF, Brazil.
Pedro Ricardo Vieira HamannSão Carlos Institute of Physics, University of São Paulo, Avenida Trabalhador São-Carlense,400, Parque Arnold Schimidt, São Carlos, SP, 13566-590, Brazil.
Eliane Ferreira NoronhaLaboratory of Enzymology, Department of Cell Biology, University of Brasília, Brasilia, DF, 70910-900, Brazil. enoronha@unb.br.
Universidade de Brasília · BRJoint Genome Institute · USUniversidade de São Paulo · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 309338/2017-4
6 · The paper itself

Abstract

The gram-positive bacterium Clostridium thermocellum contains a set of carbohydrate-active enzymes that can potentially be employed to generate high-value-added products from lignocellulose. In this study, the gene expression profiling of C. thermocellum B8 was provided during growth in the presence of sugarcane bagasse and straw as a carbon source in comparison to growth using microcrystalline cellulose. A total of 625 and 509 genes were up-regulated for growth in the presence of bagasse and straw, respectively. These genes were mainly grouped into carbohydrate-active enzymes (CAZymes), cell motility, chemotaxis, quorum sensing pathway and expression control of glycoside hydrolases. These results show that type of carbon source modulates the gene expression profiling of carbohydrate-active enzymes. In addition, highlight the importance of cell motility, attachment to the substrate and communication in deconstructing complex substrates. This present work may contribute to the development of enzymatic cocktails and industrial strains for biorefineries based on sugarcane residues as feedstock.

Indexed as

Acetivibrio thermocellusSaccharumCarbohydratesCellulosebagasseCarbohydratesCelluloseBagasseCAZymesCelluloseClostridium thermocellumStrawSugarcane

Identifiers

PMID36840776
OpenAlexW4321996657

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.