Evidence map›Paper›PMID 36837688›Full record

ArticleMembranes2023

Identification of Suitable Internal Control miRNAs in Bovine Milk Small Extracellular Vesicles for Normalization in Quantitative Real-Time Polymerase Chain Reaction.

Md Matiur Rahman, Ryoka Nakanishi, Fumi Tsukada, Shigeo Takashima, Yoshiko Wakihara, Yuji O Kamatari, Kaori Shimizu, Ayaka Okada, Yasuo Inoshima

Open access · goldAbstract read
In one paragraph

Article in Membranes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Md Matiur RahmanLaboratory of Food and Environmental Hygiene, Gifu University, Gifu 501-1193, Japan.
Ryoka NakanishiLaboratory of Food and Environmental Hygiene, Gifu University, Gifu 501-1193, Japan.
Fumi TsukadaLaboratory of Food and Environmental Hygiene, Gifu University, Gifu 501-1193, Japan.
Shigeo TakashimaDivision of Genomics Research, Life Science Research Center, Gifu University, Gifu 501-1193, Japan.ORCID 0000-0002-2273-1643
Yoshiko WakiharaDivision of Genomics Research, Life Science Research Center, Gifu University, Gifu 501-1193, Japan.
Yuji O KamatariInstitute for Glyco-Core Research (iGCORE), Gifu University, Gifu 501-1193, Japan.ORCID 0000-0001-9573-5162
Kaori ShimizuLaboratory of Food and Environmental Hygiene, Gifu University, Gifu 501-1193, Japan.
Ayaka OkadaLaboratory of Food and Environmental Hygiene, Gifu University, Gifu 501-1193, Japan.
Yasuo InoshimaLaboratory of Food and Environmental Hygiene, Gifu University, Gifu 501-1193, Japan.ORCID 0000-0002-1189-8392
Gifu University · JPSylhet Agricultural University · BD

Funding

Hirose Foundation N/AJSPS KAKENHI 21H02357 and 22F22097Kobayashi Foundation N/AMorinaga Foundation for Health and Nutrition N/AYanmar Environmental Sustainability Support Association N/A
6 · The paper itself

Abstract

This study aimed to identify a suitable RNA extraction kit and stable internal control microRNA (miRNA) in bovine milk small extracellular vesicles (sEVs) for a quantitative polymerase chain reaction (qPCR) analysis. Two RNA extraction kits, miRNeasy Micro Kit, and Maxwell RSC miRNA Tissue Kit, were compared and evaluated using bovine milk sEVs via qPCR analysis. Five miRNAs, bta-miR-29a, bta-miR-200a, bta-miR-26b, hsa-miR-27b-3p, and hsa-miR-30b-5p, were selected by microarray analyses, and their cycle threshold (Ct) values were further evaluated mathematically using geNorm, NormFinder, BestKeeper, and ∆Ct algorithms. The results revealed that both the miRNeasy Micro Kit and Maxwell RSC miRNA Tissue Kit are useful for the efficient recovery of RNA from bovine milk sEVs. According to the final stability ranking analyzed by RefFinder, hsa-miR-27b-3p and bta-miR-29a can be used as suitable internal control miRNAs in bovine milk sEVs. The study also indicated that using a suitable internal control miRNA may improve the reliability and accuracy of the qPCR analysis for normalization in bovine milk sEVs. To the best of our knowledge, this is the first study to uncover the suitable internal control miRNAs in bovine milk sEVs.

Indexed as

bovine milk small extracellular vesiclesinternal control microRNAnormalization in quantitative polymerase chain reactionRNA extraction kit

Identifiers

PMID36837688
PMCPMC9961204
OpenAlexW4318998757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.