Evidence map›Paper›PMID 36834727›Full record

ArticleInternational journal of molecular sciences2023

Multi-Omics Approaches for Revealing the Epigenetic Regulation of Histone H3.1 during Spermatogonial Stem Cell Differentiation In Vitro.

Li Liu, Haojie Li, Mengjie Wang, Xiangzheng Zhang, Jie Ren, Yan Yuan, Jiahao Sha, Xuejiang Guo

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Li LiuState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.ORCID 0000-0002-5564-452X
Haojie LiState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Mengjie WangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Xiangzheng ZhangState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Jie RenState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.
Yan YuanState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.ORCID 0000-0002-6773-1188
Jiahao ShaState Key Laboratory of Reproductive Medicine, Women's Hospital of Nanjing Medical University, Nanjing Maternity and Child Health Care Hospital, Nanjing Medical University, Nanjing 210029, China.
Xuejiang GuoState Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 210029, China.ORCID 0000-0002-0475-5705
Nanjing Medical University · CNNanjing Maternity and Child Health Care Hospital · CN

Funding

National Key Research and Development Program 2021YFC2700200National Key Research and Development Program 2021YFC2700302National Natural Science Foundation of China 31890784National Natural Science Foundation of China 82122025National Natural Science Foundation of China 92068109Natural Science Foundation of the Jiangsu Higher Education Institutions of China 21KJA310007Science Foundation of Gusu School GSKY20220101
6 · The paper itself

Abstract

Epigenetic regulation, particularly post-translational modifications (PTMs) of histones, participates in spermatogonial stem cell (SSCs) differentiation. However, there is a lack of systemic studies of histone PTM regulation during the differentiation of SSCs due to its low number in vivo. Herein, we quantified dynamic changes of 46 different PTMs on histone H3.1 by targeted quantitative proteomics using mass spectrometry during SSCs differentiation in vitro, in combination with our RNA-seq data. We identified seven histone H3.1 modifications to be differentially regulated. In addition, we selected H3K9me2 and H3S10ph for subsequent biotinylated peptide pull-down experiments and identified 38 H3K9me2-binding proteins and 42 H3S10ph-binding proteins, which contain several transcription factors, such as GTF2E2 and SUPT5H, which appear to be crucial for epigenetic regulation of SSC differentiation.

Indexed as

HistonesMultiomicsAdult Germline Stem CellsEpigenesis, GeneticMass SpectrometryProtein Processing, Post-TranslationalSpermatogoniaHistonesdifferentiationepigenetic regulationhistone modificationspermatogonial stem celltranscription factor

Identifiers

PMID36834727
PMCPMC9958608
OpenAlexW4319600289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.