Evidence map›Paper›PMID 36833449›Full record

ArticleGenes2023

Genome-Wide Association Analysis Identified Variants Associated with Body Measurement and Reproduction Traits in Shaziling Pigs.

Qun Lan, Qiuchun Deng, Shijin Qi, Yuebo Zhang, Zhi Li, Shishu Yin, Yulian Li, Hong Tan, Maisheng Wu, Yulong Yin and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Qun LanCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Qiuchun DengCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Shijin QiCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Yuebo ZhangCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Zhi LiCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Shishu YinCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Yulian LiXiang Dong Experiment Station, Hunan Provincial Pig Industrial Technology System, Xiangtan 411100, China.
Hong TanXiang Dong Experiment Station, Hunan Provincial Pig Industrial Technology System, Xiangtan 411100, China.
Maisheng WuXiang Dong Experiment Station, Hunan Provincial Pig Industrial Technology System, Xiangtan 411100, China.
Yulong YinCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Jun HeCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Mei LiuCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.ORCID 0000-0001-6057-3028
Hunan Agricultural University · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With the increasing popularity of genomic sequencing, breeders pay more attention to identifying the crucial molecular markers and quantitative trait loci for improving the body size and reproduction traits that could affect the production efficiency of pig-breeding enterprises. Nevertheless, for the Shaziling pig, a well-known indigenous breed in China, the relationship between phenotypes and their corresponding genetic architecture remains largely unknown. Herein, in the Shaziling population, a total of 190 samples were genotyped using the Geneseek Porcine 50K SNP Chip, obtaining 41857 SNPs for further analysis. For phenotypes, two body measurement traits and four reproduction traits in the first parity from the 190 Shaziling sows were measured and recorded, respectively. Subsequently, a genome-wide association study (GWAS) between the SNPs and the six phenotypes was performed. The correlation between body size and reproduction phenotypes was not statistically significant. A total of 31 SNPs were found to be associated with body length (BL), chest circumference (CC), number of healthy births (NHB), and number of stillborns (NSB). Gene annotation for those candidate SNPs identified 18 functional genes, such as

Indexed as

Genome-Wide Association StudyQuantitative Trait LociAnimalsFemaleGenotypePhenotypePregnancyReproductionSwinebody measurement traitGWASreproductive traitShaziling pigsSNP

Identifiers

PMID36833449
PMCPMC9957351
OpenAlexW4321373254

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.