Evidence map›Paper›PMID 36833217›Full record

ArticleGenes2023

DNA Double-Strand Break-Related Competitive Endogenous RNA Network of Noncoding RNA in Bovine Cumulus Cells.

Jian-Bo Liu, Jia-Bao Zhang, Xiang-Min Yan, Peng-Gui Xie, Yao Fu, Xu-Huang Fu, Xu-Lei Sun, Dong-Xu Han, Sheng-Peng Li, Yi Zheng and 4 more

Abstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jian-Bo LiuDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0002-2559-3637
Jia-Bao ZhangDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0001-8533-4744
Xiang-Min YanDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Peng-Gui XieYili Vocational and Technical College, Yili 835000, China.
Yao FuDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Xu-Huang FuDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Xu-Lei SunDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Dong-Xu HanDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Sheng-Peng LiDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Yi ZhengDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Yan GaoDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Nam-Hyung KimDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.
Bao YuanDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0003-3490-0755
Hao JiangDepartment of Laboratory Animals, College of Animal Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0003-2008-6166

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

(1) Background: DNA double strand breaks (DSBs) are the most serious form of DNA damage that affects oocyte maturation and the physiological state of follicles and ovaries. Non-coding RNAs (ncRNAs) play a crucial role in DNA damage and repair. This study aims to analyze and establish the network of ncRNAs when DSB occurs and provide new ideas for next research on the mechanism of cumulus DSB. (2) Methods: Bovine cumulus cells (CCs) were treated with bleomycin (BLM) to construct a DSB model. We detected the changes of the cell cycle, cell viability, and apoptosis to determine the effect of DSBs on cell biology, and further evaluated the relationship between the transcriptome and competitive endogenous RNA (ceRNA) network and DSBs. (3) Results: BLM increased γH2AX positivity in CCs, disrupted the G1/S phase, and decreased cell viability. Totals of 848 mRNAs, 75 long noncoding RNAs (lncRNAs), 68 circular RNAs (circRNAs), and 71 microRNAs (miRNAs) in 78 groups of lncRNA-miRNA-mRNA regulatory networks, 275 groups of circRNA-miRNA-mRNA regulatory networks, and five groups of lncRNA/circRNA-miRNA-mRNA co-expression regulatory networks were related to DSBs. Most differentially expressed ncRNAs were annotated to cell cycle, p53, PI3K-AKT, and WNT signaling pathways. (4) Conclusions: The ceRNA network helps to understand the effects of DNA DSBs activation and remission on the biological function of CCs.

Indexed as

MicroRNAsRNA, Long NoncodingAnimalsCattleCumulus CellsDNADNA Breaks, Double-StrandedFemalePhosphatidylinositol 3-KinasesRNA, CircularRNA, MessengerDNAMicroRNAsPhosphatidylinositol 3-KinasesRNA, CircularRNA, Long NoncodingRNA, MessengerbovineceRNAcumulus cellsDDRDNA double-strand breaksncRNA

Identifiers

PMID36833217
PMCPMC9956238

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.