Evidence map›Paper›PMID 36833195›Full record

ArticleGenes2023

Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.

Ahmed Ibrahem Hafez, Beatriz Soriano, Aya Allah Elsayed, Ricardo Futami, Raquel Ceprian, Ricardo Ramos-Ruiz, Genis Martinez, Francisco Jose Roig, Miguel Angel Torres-Font, Fernando Naya-Catala and 8 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 2 countries.

Ahmed Ibrahem HafezBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.ORCID 0000-0002-2343-5029
Beatriz SorianoBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.ORCID 0000-0002-8355-5911
Aya Allah ElsayedBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.
Ricardo FutamiBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.
Raquel CeprianBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.
Ricardo Ramos-RuizGenomics Unit Cantoblanco, Parque Científico de Madrid, 28049 Madrid, Spain.ORCID 0000-0002-6331-9786
Genis MartinezBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.
Francisco Jose RoigFacultad de Ciencias de la Salud, Universidad San Jorge, 50830 Zaragoza, Spain.ORCID 0000-0002-8853-2428
Miguel Angel Torres-FontBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.
Fernando Naya-CatalaInstitute of Aquaculture Torre de la Sal (IATS), Consejo Superior de Investigaciones Cientificas (CSIC), 12595 Castellón, Spain.ORCID 0000-0003-0553-109X
Josep Alvar Calduch-GinerInstitute of Aquaculture Torre de la Sal (IATS), Consejo Superior de Investigaciones Cientificas (CSIC), 12595 Castellón, Spain.ORCID 0000-0003-3124-5986
Lucia Trilla-FuertesBiomedica Molecular Medicine SL, Parque Científico de Madrid, 28049 Madrid, Spain.ORCID 0000-0002-4452-3474
Angelo Gamez-PozoBiomedica Molecular Medicine SL, Parque Científico de Madrid, 28049 Madrid, Spain.ORCID 0000-0002-8931-0624
Vicente ArnauInstitute for Integrative Systems Biology (I2SysBio), Universitat de Valencia y CSIC, UVEG-CSIC, 46980 Paterna, Spain.ORCID 0000-0002-1388-6141
Jose Maria Sempere-LunaValencian Research Institute for Artificial Intelligence (VRAIN-UPV), Universitat Politècnica de València, 46022 Valencia, Spain.ORCID 0000-0003-2393-9224
Jaume Perez-SanchezInstitute of Aquaculture Torre de la Sal (IATS), Consejo Superior de Investigaciones Cientificas (CSIC), 12595 Castellón, Spain.ORCID 0000-0003-2506-1523
Toni GabaldonFaculty of Biomedical and Life Sciencies, Universitat Pompeu Fabra, 08002 Barcelona, Spain.
Carlos LlorensBiotechvana, Parc Científic Universitat de València, 46980 Paterna, Spain.ORCID 0000-0003-1402-4743
Parc Científic de la Universitat de València · ESConsejo Superior de Investigaciones Científicas · ESUniversitat de València · ESArtificial Intelligence Research Institute · ESHospital Universitario La Paz · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversidad San Jorge · ESUniversitat Pompeu Fabra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The GPRO suite is an in-progress bioinformatic project for -omics data analysis. As part of the continued growth of this project, we introduce a client- and server-side solution for comparative transcriptomics and analysis of variants. The client-side consists of two Java applications called "

Indexed as

SoftwareUser-Computer InterfaceComputational BiologyDatabases, FactualHumansWorkflowartificial intelligenceinterface environmentspipelinesresequencingRNASeqserver-sideVariantSeqworkflows

Identifiers

PMID36833195
PMCPMC9957322
OpenAlexW4317624074

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.