Evidence map›Paper›PMID 36831619›Full record

ArticleCancers2023

Improving the Post-Operative Prediction of BCR-Free Survival Time with mRNA Variables and Machine Learning.

Autumn O'Donnell, Eric Wolsztynski, Michael Cronin, Shirin Moghaddam

Abstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Autumn O'DonnellSchool of Mathematical Sciences, Western Gateway Building, Western Road, University College Cork, T12 XF62 Cork, Ireland.ORCID 0000-0002-4787-7462
Eric WolsztynskiSchool of Mathematical Sciences, Western Gateway Building, Western Road, University College Cork, T12 XF62 Cork, Ireland.ORCID 0000-0001-9770-9769
Michael CroninSchool of Mathematical Sciences, Western Gateway Building, Western Road, University College Cork, T12 XF62 Cork, Ireland.
Shirin MoghaddamDepartment of Mathematics and Statistics (MACSI), University of Limerick, V94 T9PX Limerick, Ireland.ORCID 0000-0002-9965-1510

Funding

Higher Education Authority Human Capital Initiative Pillar 1, 2020Science Foundation Ireland 12/RC/2289-P2, co-funded under the European 331 Regional Development Fund
6 · The paper itself

Abstract

Predicting the risk of, and time to biochemical recurrence (BCR) in prostate cancer patients post-operatively is critical in patient treatment decision pathways following surgical intervention. This study aimed to investigate the predictive potential of mRNA information to improve upon reference nomograms and clinical-only models, using a dataset of 187 patients that includes over 20,000 features. Several machine learning methodologies were implemented for the analysis of censored patient follow-up information with such high-dimensional genomic data. Our findings demonstrated the potential of inclusion of mRNA information for BCR-free survival prediction. A random survival forest pipeline was found to achieve high predictive performance with respect to discrimination, calibration, and net benefit. Two mRNA variables, namely ESM1 and DHAH8, were identified as consistently strong predictors with this dataset.

Indexed as

biochemical recurrencebioinformaticsgenomicsmachine learningpersonalised medicinepredictionprostate cancerstatistical modellingsurvival analysis

Identifiers

PMID36831619
PMCPMC9954694

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.