Evidence map›Paper›PMID 36831395›Full record

ArticleCancers2023

Genome-Wide Analysis of lncRNA-mRNA Co-Expression Networks in CD133+/CD44+ Stem-like PDAC Cells.

Giasemi C Eptaminitaki, Apostolos Zaravinos, Dimitris Stellas, Maria Panagopoulou, Sevasti Karaliota, Ismini Baltsavia, Ioannis Iliopoulos, Ekaterini Chatzaki, Dimitrios Iliopoulos, Stavroula Baritaki

Abstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Giasemi C EptaminitakiLaboratory of Experimental Oncology, Division of Surgery, School of Medicine, University of Crete, 71003 Heraklion, Greece.ORCID 0000-0001-9202-2183
Apostolos ZaravinosBasic and Translational Cancer Research Center (BTCRC), Genomics and Systems Biology Laboratory, Cancer Genetics, Nicosia 1516, Cyprus.ORCID 0000-0003-4625-5562
Dimitris StellasInstitute of Chemical Biology, National Hellenic Research Foundation, 11635 Athens, Greece.ORCID 0000-0002-7787-3921
Maria PanagopoulouLaboratory of Pharmacology, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece.ORCID 0000-0002-7107-4774
Sevasti KaraliotaLaboratory of Experimental Oncology, Division of Surgery, School of Medicine, University of Crete, 71003 Heraklion, Greece.ORCID 0000-0001-7226-8207
Ismini BaltsaviaLaboratory of Computational Biology, Division of Basic Sciences, School of Medicine, University of Crete, 71003 Heraklion, Greece.ORCID 0000-0002-1735-4468
Ioannis IliopoulosLaboratory of Computational Biology, Division of Basic Sciences, School of Medicine, University of Crete, 71003 Heraklion, Greece.
Ekaterini ChatzakiLaboratory of Pharmacology, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece.ORCID 0000-0002-5832-4257
Dimitrios IliopoulosAthos Therapeutics Inc., Los Angeles, CA 90502, USA.
Stavroula BaritakiLaboratory of Experimental Oncology, Division of Surgery, School of Medicine, University of Crete, 71003 Heraklion, Greece.

Funding

Hellenic Foundation for Research and Innovation (H.F.R.I.) H.F.R.I-FM17-3099
6 · The paper itself

Abstract

Pancreatic ductal adenocarcinoma (PDAC), the second most prevalent gastrointestinal malignancy and the most common type of pancreatic cancer is linked with poor prognosis and, eventually, with high mortality rates. Early detection is seldom, while tumor heterogeneity and microarchitectural alterations benefit PDAC resistance to conventional therapeutics. Although emerging evidence suggest the core role of cancer stem cells (CSCs) in PDAC aggressiveness, unique stem signatures are poorly available, thus limiting the efforts of anti-CSC-targeted therapy. Herein, we report the findings of the first genome-wide analyses of mRNA/lncRNA transcriptome profiling and co-expression networks in PDAC cell line-derived CD133+/CD44+ cells, which were shown to bear a CSC-like phenotype in vitro and in vivo. Compared to CD133-/CD44- cells, the CD133+/CD44+ population demonstrated significant expression differences in both transcript pools. Using emerging bioinformatic tools, we performed lncRNA target coding gene prediction analysis, which revealed significant Gene Ontology (GO), pathway, and network enrichments in many dyregulated lncRNA nearby (

Indexed as

cancer biomarkerscancer stem cells (CSCs)long non-coding RNAs (lncRNAs)pancreatic ductal adenocarcinoma (PDAC)

Identifiers

PMID36831395
PMCPMC9954787

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.