Evidence map›Paper›PMID 36830965›Full record

ArticleBiomedicines2023

Whole-Blood Gene Expression Profiles Associated with Mortality in Community-Acquired Pneumonia.

Diego Viasus, Antonella F Simonetti, Lara Nonell, Oscar Vidal, Yolanda Meije, Lucía Ortega, Magdalena Arnal, Marta Bódalo-Torruella, Montserrat Sierra, Alexander Rombauts and 4 more

Open access · goldAbstract read
In one paragraph

Article in Biomedicines, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Diego ViasusDepartment of Medicine, Division of Health Sciences, Universidad del Norte and Hospital Universidad del Norte, Barranquilla 081001, Colombia.ORCID 0000-0001-8408-3947
Antonella F SimonettiDepartment of Internal Medicine, Consorci Sanitari Alt Penedès-Garraf, 08720 Sant Pere de Ribes, Spain.ORCID 0000-0002-7707-082X
Lara NonellMARGenomics, Hospital del Mar Medical Research Institute (IMIM), 08003 Barcelona, Spain.
Oscar VidalDepartment of Medicine, Division of Health Sciences, Universidad del Norte and Hospital Universidad del Norte, Barranquilla 081001, Colombia.ORCID 0000-0002-7807-1242
Yolanda MeijeUnit of Infectious Disease, Department of Internal Medicine, Hospital de Barcelona-Societat Cooperativa d'Instal·lacions Assistencials Sanitàries (SCIAS), 08029 Barcelona, Spain.
Lucía OrtegaUnit of Infectious Disease, Department of Internal Medicine, Hospital de Barcelona-Societat Cooperativa d'Instal·lacions Assistencials Sanitàries (SCIAS), 08029 Barcelona, Spain.
Magdalena ArnalMARGenomics, Hospital del Mar Medical Research Institute (IMIM), 08003 Barcelona, Spain.
Marta Bódalo-TorruellaMARGenomics, Hospital del Mar Medical Research Institute (IMIM), 08003 Barcelona, Spain.ORCID 0000-0002-5950-4700
Montserrat SierraMicrobiology Unit, Department of Clinical Laboratory, Hospital de Barcelona-Societat Cooperativa d'Instal·lacions Assistencials Sanitàries (SCIAS), 08029 Barcelona, Spain.
Alexander RombautsDepartment of Infectious Diseases, Bellvitge University Hospital-Bellvitge Biomedical Research Institute (IDIBELL), 08907 Barcelona, Spain.
Gabriela Abelenda-AlonsoDepartment of Infectious Diseases, Bellvitge University Hospital-Bellvitge Biomedical Research Institute (IDIBELL), 08907 Barcelona, Spain.
Gemma BlanchartCardiovascular Risk and Nutrition Research Group, Hospital del Mar Medical Research Institute (IMIM), 08003 Barcelona, Spain.
Carlota GudiolCentro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Institulo de Salud Carlos III, 28029 Madrid, Spain.
Jordi CarratalàCentro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Institulo de Salud Carlos III, 28029 Madrid, Spain.
Hospital Del Mar · ESAgència de Qualitat i Avaluació Sanitàries de Catalunya · ESInstituto de Salud Carlos III · ESBellvitge University Hospital · ESUniversidad del Norte · CO

Funding

CERCA Institution No applicableInstituto de Salud Carlos III 11/01106, 14/00580, 17/01332, CB21/13/00009, FI18/00183La Marató-TV3 201808-10
6 · The paper itself

Abstract

(1) Background: Information regarding gene expression profiles and the prognosis of community-acquired pneumonia (CAP) is scarce. We aimed to examine the differences in the gene expression profiles in peripheral blood at hospital admission between patients with CAP who died during hospitalization and those who survived. (2) Methods: This is a multicenter study of nonimmunosuppressed adult patients who required hospitalization for CAP. Whole blood samples were obtained within 24 h of admission for genome-expression-profile analysis. Gene expression profiling identified both differentially expressed genes and enriched gene sets. (3) Results: A total of 198 samples from adult patients who required hospitalization for CAP were processed, of which 13 were from patients who died. Comparison of gene expression between patients who died and those who survived yielded 49 differentially expressed genes, 36 of which were upregulated and 13 downregulated. Gene set enrichment analysis (GSEA) identified four positively enriched gene sets in survivors, mainly associated with the interferon-alpha response, apoptosis, and sex hormone pathways. Similarly, GSEA identified seven positively enriched gene sets, associated with the oxidative stress, endoplasmic reticulum stress, oxidative phosphorylation, and angiogenesis pathways, in the patients who died. Protein-protein-interaction-network analysis identified

Indexed as

community-acquired pneumoniagene expression profilegene set enrichment analysismortality

Identifiers

PMID36830965
PMCPMC9953679
OpenAlexW4319005751

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.