Evidence map›Paper›PMID 36828924›Full record

ArticleEuropean journal of human genetics : EJHG2023

Loss of function of ADNP by an intragenic inversion.

Mathieu Georget, Elodie Lejeune, Julien Buratti, Euphrasie Servant, Eric le Guern, Delphine Heron, Boris Keren, Jean-Madeleine de Sainte Agathe

Open access · greenAbstract readCase Reports
In one paragraph

Article in European journal of human genetics : EJHG, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. ADNP in reverse gear.European journal of human genetics : EJHG · 2023
    Article
  9. A novel genomic mutation in ADNP leading to intellectual disability.European journal of human genetics : EJHG · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Mathieu GeorgetDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France. mathieu.georget@aphp.fr.ORCID 0000-0002-7963-8124
Elodie LejeuneDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.
Julien BurattiDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.ORCID 0000-0002-0901-0905
Euphrasie ServantDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.
Eric le GuernDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.
Delphine HeronDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.
Boris KerenDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.
Jean-Madeleine de Sainte AgatheDepartment of Medical Genetics, AP-HP.Sorbonne Université, Pitié-Salpêtrière University Hospital, Paris, France.ORCID 0000-0002-7753-8226
Sorbonne Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ADNP is a well-known gene implicated in intellectual disability and its molecular spectrum consists mainly in loss of function variant in the ADNP last and largest exon. Here, we report the first description of a patient with intellectual disability identified with an intragenic inversion in ADNP. RNAseq experiment showed a splice skipping of the inversed exons. Moreover, in-silico analysis of initiating ATGs in the mutated transcript using contextual Kozak score suggested that several initiating ATGs were likely used to translate poisonous out-of-frame ORFs and would lead to the suppression of any in-frame rescuing translation, thereby causing haploinsufficiency. As constitutive Alu sequences with high homology were identified at both breakpoints in reversed orientation in the reference genome, we hypothesized that Alu-mediated non-allelic-homologous recombination was responsible for this rearrangement. Therefore, as this inversion is not detectable by exome sequencing, this mechanism could be a potential underdiagnosed recurrent mutation in ADNP-related disorders.

Indexed as

Intellectual DisabilityExonsHomeodomain ProteinsHumansMutationNerve Tissue ProteinsADNP protein, humanHomeodomain ProteinsNerve Tissue Proteins

Identifiers

PMID36828924
PMCPMC10400548
OpenAlexW4321789494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.