Evidence map›Paper›PMID 36828854›Full record

ArticleScientific reports2023

Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland.

Hang Yu, Lingling Xiong, Yanmei Li, Yunlin Wei, Qi Zhang, Haiyan Li, Wei Chen, Xiuling Ji

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hang Yu *Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Lingling Xiong *Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Yanmei LiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Yunlin WeiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Qi ZhangFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Haiyan LiMedical School, Kunming University of Science and Technology, Kunming, China.
Wei ChenMedical School, Kunming University of Science and Technology, Kunming, China. wchen@kust.edu.cn.
Xiuling JiMedical School, Kunming University of Science and Technology, Kunming, China. jixiuling1023@126.com.
Kunming University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of phosphorus metabolism AMGs phoH, phoU and pstS was investigated by phylogenetic analysis, PCoA analysis, and alpha diversity analysis based on metagenomic data. It was found that the majority of the sequences were unique to Napahai plateau wetland. It was shown that the genetic diversity of phoH, phoU and pstS genes was independent of both habitats and host origins. In addition, the metabolic pathway of AMGs associated with the phosphorus cycling was identified based on metagenomic data. When phosphorus is deficient, virus utilizes AMGs to affect the metabolic pathway, contributing to higher phosphorus levels in the host and facilitating virus survival, replication, and propagation in the host cell.

Indexed as

VirusesWetlandsEcosystemGenes, ViralGenetic VariationPhylogeny

Identifiers

PMID36828854
PMCPMC9958192
OpenAlexW4321783237

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.