Evidence map›Paper›PMID 36828833›Full record

ArticleNature communications2023

Somatically hypermutated antibodies isolated from SARS-CoV-2 Delta infected patients cross-neutralize heterologous variants.

Haisheng Yu, Banghui Liu, Yudi Zhang, Xijie Gao, Qian Wang, Haitao Xiang, Xiaofang Peng, Caixia Xie, Yaping Wang, Peiyu Hu and 29 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

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  6. Review
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  8. Explore antibody repertoire in the era of AI.Acta biochimica et biophysica Sinica · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 9 institutions in 1 country.

Haisheng Yu *Guangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China. yuhaisheng@gzhmu.edu.cn.ORCID 0000-0002-1757-1411
Banghui Liu *The State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China.
Yudi Zhang *The State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China.
Xijie Gao *Bioland Laboratory (Guangzhou Regenerative Medicine and Health-Guangdong Laboratory), Guangzhou, China.ORCID 0000-0002-0602-4690
Qian Wang *State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Haitao Xiang *BGI-Shenzhen, Shenzhen, China.
Xiaofang Peng *Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Caixia Xie *BGI-Shenzhen, Shenzhen, China.
Yaping Wang *Guangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.
Peiyu HuBioland Laboratory (Guangzhou Regenerative Medicine and Health-Guangdong Laboratory), Guangzhou, China.
Jingrong ShiGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.ORCID 0000-0003-3019-3272
Quan ShiBGI-Shenzhen, Shenzhen, China.
Pingqian ZhengBioland Laboratory (Guangzhou Regenerative Medicine and Health-Guangdong Laboratory), Guangzhou, China.
Chengqian FengGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.
Guofang TangGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.
Xiaopan LiuBGI-Shenzhen, Shenzhen, China.
Liliangzi GuoGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.
Xiumei LinBGI-Shenzhen, Shenzhen, China.
Jiaojiao LiGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.
Chuanyu LiuBGI-Shenzhen, Shenzhen, China.ORCID 0000-0003-2258-0897
Yaling HuangBGI-Shenzhen, Shenzhen, China.
Naibo YangBGI-Shenzhen, Shenzhen, China.
Qiuluan ChenBioland Laboratory (Guangzhou Regenerative Medicine and Health-Guangdong Laboratory), Guangzhou, China.
Zimu LiThe State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China.
Mengzhen SuThe State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China.
Qihong YanThe State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China.
Rongjuan PeiState Key Laboratory of Virology, Center for Biosafety Mega-Science, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China.
Xinwen ChenGuangzhou Laboratory, Guangzhou International Bio Island, Guangzhou, China.ORCID 0000-0002-4052-8155
Longqi LiuBGI-Shenzhen, Shenzhen, China.ORCID 0000-0002-5828-5542
Fengyu HuGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China.
Dan LiangGuangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Bixia KeGuangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Changwen KeGuangdong Provincial Center for Disease Control and Prevention, Guangzhou, China. kecw1965@aliyun.com.
Feng LiGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China. gz8h_lifeng@126.com.ORCID 0000-0003-3169-6349
Jun HeThe State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China. he_jun@gibh.ac.cn.ORCID 0000-0003-0270-9729
Meiniang WangBGI-Shenzhen, Shenzhen, China. wangmeiniang@genomics.cn.ORCID 0000-0003-4249-6254
Ling ChenGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China. chen_ling@gibh.ac.cn.ORCID 0000-0003-1485-1626
Xiaoli XiongThe State Key Laboratory of Respiratory Disease, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangdong Provincial Key Laboratory of Biocomputing, Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, the Chinese Academy of Sciences, Guangzhou, China. xiong_xiaoli@gibh.ac.cn.ORCID 0000-0002-4632-9122
Xiaoping TangGuangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou, China. tangxp@gzhmu.edu.cn.ORCID 0000-0002-5067-659X
BGI Group (China) · CNGuangzhou Eighth People's Hospital · CNChinese Academy of Sciences · CNGuangdong Provincial Center for Disease Control and Prevention · CNGuangzhou Experimental Station · CNGuangzhou Institutes of Biomedicine and Health · CNGuangzhou Regenerative Medicine and Health Guangdong Laboratory · CNFirst Affiliated Hospital of Guangzhou Medical University · CNUniversity of Science and Technology of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 Omicron variants feature highly mutated spike proteins with extraordinary abilities in evading antibodies isolated earlier in the pandemic. Investigation of memory B cells from patients primarily with breakthrough infections with the Delta variant enables isolation of a number of neutralizing antibodies cross-reactive to heterologous variants of concern (VOCs) including Omicron variants (BA.1-BA.4). Structural studies identify altered complementarity determining region (CDR) amino acids and highly unusual heavy chain CDR2 insertions respectively in two representative cross-neutralizing antibodies-YB9-258 and YB13-292. These features are putatively introduced by somatic hypermutation and they are heavily involved in epitope recognition to broaden neutralization breadth. Previously, insertions/deletions were rarely reported for antiviral antibodies except for those induced by HIV-1 chronic infections. These data provide molecular mechanisms for cross-neutralization of heterologous SARS-CoV-2 variants by antibodies isolated from Delta variant infected patients with implications for future vaccination strategy.

Indexed as

COVID-19SARS-CoV-2Antibodies, NeutralizingAntibodies, ViralHumansSpike Glycoprotein, CoronavirusAntibodies, NeutralizingAntibodies, ViralSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID36828833
PMCPMC9951844
OpenAlexW4321790964

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.