Evidence map›Paper›PMID 36827370›Full record

ArticleScience advances2023

A microbiota and dietary metabolite integrates DNA repair and cell death to regulate embryo viability and aneuploidy during aging.

Robert Sonowal, Alyson I Swimm, Francesca Cingolani, Noyonika Parulekar, Tesia L Cleverley, Anusmita Sahoo, Ayush Ranawade, Debalina Chaudhuri, Edward S Mocarski, Heather Koehler and 3 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Bacterial metabolism of tryptophan causes toxicity inbioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. TNFSF14The EMBO journal · 2024
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Robert SonowalDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0002-3822-3109
Alyson I SwimmDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0001-9975-0247
Francesca CingolaniDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.
Noyonika ParulekarDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0001-9279-9486
Tesia L CleverleyDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0002-5141-2764
Anusmita SahooEmory Vaccine Center, Emory University, Atlanta, GA, USA.ORCID 0000-0001-6903-969X
Ayush RanawadeDepartment of Biology, Northeastern University, Boston, MA, USA.ORCID 0000-0002-4395-2293
Debalina ChaudhuriDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0002-0992-992X
Edward S MocarskiEmory Vaccine Center, Emory University, Atlanta, GA, USA.
Heather KoehlerDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0002-3061-9942
Karolina NitscheMouse Transgenic and Gene Targeting Core, Emory University, Atlanta, GA, USA.ORCID 0000-0002-6629-1053
Sam MesianoDepartment of Reproductive Biology, Case Western Reserve University and Department of Obstetrics and Gynecology, University Hospitals of Cleveland, Cleveland, OH, USA.
Daniel KalmanDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0003-0693-2928
Emory University · USNortheastern University · USTransgene (France) · FRUniversity Hospitals of Cleveland · US

Funding

Bacterial factors modulating host immunityR01DK074731 · NIDDK · EMORY UNIVERSITY · PI KALMAN, DANIEL · 2008 to 2018
$2.4M
Microbiota-derived indoles control epithelial barrier integrity in response to acute stressors and agingR56DK074731 · NIDDK · EMORY UNIVERSITY · PI KALMAN, DANIEL, WARMFLASH, ARYEH · 2006 to 2020
$817k
Intestinal microbiota effects on damage tolerance in agingR21AG054903 · NIA · EMORY UNIVERSITY · PI KALMAN, DANIEL · 2017 to 2018
$429k
NIA NIH HHS R21 AG054903NIDDK NIH HHS R01 DK074731NIDDK NIH HHS R56 DK074731
6 · The paper itself

Abstract

During aging, environmental stressors and mutations along with reduced DNA repair cause germ cell aneuploidy and genome instability, which limits fertility and embryo development. Benevolent commensal microbiota and dietary plants secrete indoles, which improve healthspan and reproductive success, suggesting regulation of germ cell quality. We show that indoles prevent aneuploidy and promote DNA repair and embryo viability, which depends on age and genotoxic stress levels and affects embryo quality across generations. In young animals or with low doses of radiation, indoles promote DNA repair and embryo viability; however, in older animals or with high doses of radiation, indoles promote death of the embryo. These studies reveal a previously unknown quality control mechanism by which indole integrates DNA repair and cell death responses to preclude germ cell aneuploidy and ensure transgenerational genome integrity. Such regulation affects healthy aging, reproductive senescence, cancer, and the evolution of genetic diversity in invertebrates and vertebrates.

Indexed as

AneuploidyMicrobiotaAnimalsCell DeathDNA RepairIndolesIndoles

Identifiers

PMID36827370
PMCPMC9956122
OpenAlexW4321766577

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.