Evidence map›Paper›PMID 36826941›Full record

ArticleJournal of imaging2023

Synthetic Data Generation for Automatic Segmentation of X-ray Computed Tomography Reconstructions of Complex Microstructures.

Athanasios Tsamos, Sergei Evsevleev, Rita Fioresi, Francesco Faglioni, Giovanni Bruno

Abstract read
In one paragraph

Article in Journal of imaging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Athanasios TsamosBundesanstalt für Materialforschung und-Prüfung (Federal Institute for Materials Research and Testing), 12205 Berlin, Germany.
Sergei EvsevleevBundesanstalt für Materialforschung und-Prüfung (Federal Institute for Materials Research and Testing), 12205 Berlin, Germany.
Rita FioresiDepartment of Farmacy and Biotechnology (FABIT), University of Bologna, 40126 Bologna, Italy.ORCID 0000-0003-4075-7641
Francesco FaglioniDepartment of Chemical end Geological Sciences (DSCG), University of Modena and Reggio Emilia, 41125 Modena, Italy.
Giovanni BrunoBundesanstalt für Materialforschung und-Prüfung (Federal Institute for Materials Research and Testing), 12205 Berlin, Germany.ORCID 0000-0001-9632-3960

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The greatest challenge when using deep convolutional neural networks (DCNNs) for automatic segmentation of microstructural X-ray computed tomography (XCT) data is the acquisition of sufficient and relevant data to train the working network. Traditionally, these have been attained by manually annotating a few slices for 2D DCNNs. However, complex multiphase microstructures would presumably be better segmented with 3D networks. However, manual segmentation labeling for 3D problems is prohibitive. In this work, we introduce a method for generating synthetic XCT data for a challenging six-phase Al-Si alloy composite reinforced with ceramic fibers and particles. Moreover, we propose certain data augmentations (brightness, contrast, noise, and blur), a special in-house designed deep convolutional neural network (Triple UNet), and a multi-view forwarding strategy to promote generalized learning from synthetic data and therefore achieve successful segmentations. We obtain an overall Dice score of 0.77. Lastly, we prove the detrimental effects of artifacts in the XCT data on achieving accurate segmentations when synthetic data are employed for training the DCNNs. The methods presented in this work are applicable to other materials and imaging techniques as well. Successful segmentation coupled with neural networks trained with synthetic data will accelerate scientific output.

Indexed as

3D deep convolutional neural network (3D DCNN)automatic segmentationDice scoremetal matrix composite (MMC)modified U-Net architecturesmulti-phase materials

Identifiers

PMID36826941
PMCPMC9968002

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.