Evidence map›Paper›PMID 36825437›Full record

ArticleThe EMBO journal2023

Stress-dependent macromolecular crowding in the mitochondrial matrix.

Elianne P Bulthuis, Cindy E J Dieteren, Jesper Bergmans, Job Berkhout, Jori A Wagenaars, Els M A van de Westerlo, Emina Podhumljak, Mark A Hink, Laura F B Hesp, Hannah S Rosa and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Macromolecular Crowding in Mitochondria.Sub-cellular biochemistry · 2025
    Review
  10. Macromolecular Crowding in Cell Stress and Death.Sub-cellular biochemistry · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Osmolarity-Induced Altered Intracellular Molecular Crowding Drives Osteoarthritis Pathology.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Elianne P Bulthuis *Department of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.ORCID 0000-0002-1692-8503
Cindy E J Dieteren *Department of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.
Jesper BergmansDepartment of Pediatrics, Amalia Children's Hospital, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Center (Radboudumc), Nijmegen, The Netherlands.ORCID 0000-0002-9063-2786
Job BerkhoutDepartment of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.
Jori A WagenaarsDepartment of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.
Els M A van de WesterloDepartment of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.ORCID 0000-0002-0444-398X
Emina PodhumljakDepartment of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.
Mark A HinkSwammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Laura F B HespDepartment of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.
Hannah S RosaDepartment of Diabetes, King's College London, London, UK.
Afshan N MalikDepartment of Diabetes, King's College London, London, UK.
Mariska Kea-Te LindertDepartment of Cell Biology and Electron Microscopy Center, Radboudumc, Nijmegen, The Netherlands.
Peter H G M WillemsDepartment of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.ORCID 0000-0002-0915-1599
Han J G E GardeniersMesoscale Chemical Systems, University of Twente, Enschede, The Netherlands.ORCID 0000-0003-0581-2668
Wouter K den Otter *MESA+ Institute for Nanotechnology, University of Twente, Enschede, The Netherlands.ORCID 0000-0002-5645-527X
Merel J W Adjobo-Hermans *Department of Biochemistry, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Centre (Radboudumc), Nijmegen, The Netherlands.ORCID 0000-0002-5947-2876
Werner J H Koopman *Department of Pediatrics, Amalia Children's Hospital, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud Center for Mitochondrial Medicine (RCMM), Radboud University Medical Center (Radboudumc), Nijmegen, The Netherlands.ORCID 0000-0002-5340-6747
Radboud University Nijmegen · NLKing's College London · GBUniversity of Twente · NLUniversity of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macromolecules of various sizes induce crowding of the cellular environment. This crowding impacts on biochemical reactions by increasing solvent viscosity, decreasing the water-accessible volume and altering protein shape, function, and interactions. Although mitochondria represent highly protein-rich organelles, most of these proteins are somehow immobilized. Therefore, whether the mitochondrial matrix solvent exhibits macromolecular crowding is still unclear. Here, we demonstrate that fluorescent protein fusion peptides (AcGFP1 concatemers) in the mitochondrial matrix of HeLa cells display an elongated molecular structure and that their diffusion constant decreases with increasing molecular weight in a manner typical of macromolecular crowding. Chloramphenicol (CAP) treatment impaired mitochondrial function and reduced the number of cristae without triggering mitochondrial orthodox-to-condensed transition or a mitochondrial unfolded protein response. CAP-treated cells displayed progressive concatemer immobilization with increasing molecular weight and an eightfold matrix viscosity increase, compatible with increased macromolecular crowding. These results establish that the matrix solvent exhibits macromolecular crowding in functional and dysfunctional mitochondria. Therefore, changes in matrix crowding likely affect matrix biochemical reactions in a manner depending on the molecular weight of the involved crowders and reactants.

Indexed as

MitochondriaProteinsHeLa CellsHumansMacromolecular SubstancesSolventsMacromolecular SubstancesProteinsSolventschloramphenicoldiffusionFRAPmacromolecular crowdingmitochondria

Identifiers

PMID36825437
PMCPMC10068333
OpenAlexW4321748978

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.