ArticleGigaByte (Hong Kong, China)2022
A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340.
Article in GigaByte (Hong Kong, China), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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8 citing papers in PubMed, 13 citations in OpenAlex.
- Novel perpetual genetic population development and genome assembly of superior maize inbred lines provide insights into genetic improvement.BMC biology · 2025Article
- Insights into the genomic divergence of maize heterotic groups in China.Journal of integrative plant biology · 2025Article
- The Ribosomal Operon Database: A Full-Length rDNA Operon Database Derived From Genome Assemblies.Molecular ecology resources · 2025Article
- PidTools: Algorithm and web tools for crop pedigree identification analysis.Computational and structural biotechnology journal · 2024Article
- Biparental graph strategy to represent and analyze hybrid plant genomes.Plant physiology · 2024Article
- Gene mining and genomics-assisted breeding empowered by the pangenome of tea plant Camellia sinensis.Nature plants · 2023Article
- A chromosome-level genome assembly and annotation of the maize elite breeding line Dan340.GigaByte (Hong Kong, China) · 2022Article
- Chromosome-Level Genome Assembly and Annotation of the Fiber Flax (Frontiers in genetics · 2021Article
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Authors and funding
13 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Background: Maize is an important model organism for genetics and genomics research. Though reference genomes of maize are available, some genomes of important genetic germplasms for maize breeding are still lacking, for instance, the cultivar Dan340, which is a backbone inbred line of the LvDa Red Cob Group with several desirable characteristics. In this study, we constructed a high-quality chromosome-level reference genome for Dan340 by using long HiFi reads, short reads, and Hi-C. The final assembly of the Dan340 genome was 2348.72 Mb, which was anchored to 10 chromosomes. Repeat sequences accounted for 73.40% of the genome and 39,733 protein-coding genes were annotated. Comparative genomic analysis between Dan340 and other maize lines identified that 1806 genes from 359 gene families were specific to Dan340. Conclusions: Our genome assembly and annotation provide a valuable resource for improving maize breeding and further understanding the intraspecific genome diversity in maize.
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