Evidence map›Paper›PMID 36824427›Full record

ArticleArXiv2023

Community-developed checklists for publishing images and image analyses.

Christopher Schmied, Michael S Nelson, Sergiy Avilov, Gert-Jan Bakker, Cristina Bertocchi, Johanna Bischof, Ulrike Boehm, Jan Brocher, Mariana Carvalho, Catalin Chiritescu and 44 more

Abstract readPreprint
PubMed Full text at PMC
In one paragraph

Article in ArXiv, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

54 authors.

Christopher SchmiedFondazione Human Technopole, Viale Rita Levi-Montalcini 1, 20157 Milano, Italy.
Michael S NelsonDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Sergiy AvilovMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Gert-Jan BakkerMedical BioSciences department, Radboud University Medical Centre, Nijmegen, Netherlands.
Cristina BertocchiLaboratory for Molecular mechanics of cell adhesions, Pontificia Universidad Católica de Chile Santiago.
Johanna BischofEuro-BioImaging ERIC, Bio-Hub, Meyerhofstr. 1, 69117 Heidelberg, Germany.
Ulrike BoehmCarl Zeiss AG, Carl-Zeiss-Straße 22, 73447 Oberkochen, Germany.
Jan BrocherBioVoxxel, Scientific Image Processing and Analysis, Eugen-Roth-Strasse 8, 67071 Ludwigshafen, Germany.
Mariana CarvalhoNanophotonics and BioImaging Facility at INL, International Iberian Nanotechnology Laboratory, 4715-330, Portugal.
Catalin ChiritescuPhi Optics, Inc., 1800 S. Oak St, Ste 106, Champaign, IL 61820, USA.
Jana ChristopherBiochemistry Center Heidelberg, Heidelberg University, Germany.
Beth A CiminiImaging Platform, Broad Institute, Cambridge, MA 02142.
Eduardo Conde-Sousai3S, Instituto de Investigação e Inovação Em Saúde and INEB, Instituto de Engenharia Biomédica, Universidade do Porto, Porto, Portugal.
Michael EbnerFondazione Human Technopole, Viale Rita Levi-Montalcini 1, 20157 Milano, Italy.
Rupert EckerTranslational Research Institute, Queensland University of Technology, 37 Kent Street, Woolloongabba, QLD 4102, Australia.
Kevin EliceiriDepartment of Medical Physics and Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Julia Fernandez-RodriguezCentre for Cellular Imaging Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden.
Nathalie GaudreaultAllen Institute for Cell Science, Seattle, WA, USA.
Laurent GelmanFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
David GrunwaldRNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Tingting GuUniversity of Oklahoma, Norman, OK, USA.
Nadia HalidiAdvanced Light Microscopy Unit, Centre for Genomic Regulation, Barcelona, Spain.
Mathias HammerRNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Matthew HartleyEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.
Marie HeldCentre for Cell Imaging, The University of Liverpool, UK.
Florian JugFondazione Human Technopole, Viale Rita Levi-Montalcini 1, 20157 Milano, Italy.
Varun KapoorDepartment of AI research, Kapoor Labs, Paris, 75005, France.
Ayse Aslihan KoksoyMD Anderson Cancer Center, Houston, TX, USA.
Judith LacosteMIA Cellavie Inc., Montreal, QC Canada.
Sylvia Le DévédecDivision of Drug Discovery and Safety, Cell Observatory, Leiden Academic Centre for Drug Research, Leiden University, 2333 CC Leiden, The Netherlands.
Sylvie Le GuyaderKarolinska Institutet, Hälsovägen 7C, 14157, Huddinge, Sweden.
Penghuan LiuKey Laboratory for Modern Measurement Technology and Instruments of Zhejiang Province, College of Optical and Electronic Technology, China Jiliang University, Hangzhou, China.
Gabriel G MartinsAdvanced Imaging Facility, Instituto Gulbenkian de Ciência, Oeiras 2780-156 - Portugal.
Aastha MathurEuro-BioImaging ERIC, Bio-Hub, Meyerhofstr. 1, 69117 Heidelberg, Germany.
Kota MiuraBioimage Analysis & Research, 69127 Heidelberg/Germany.
Paula Montero LlopisMicRoN Core, Harvard Medical School, Boston, MA, USA.
Roland NitschkeLife Imaging Center, Signalling Research Centres CIBSS and BIOSS, University of Freiburg, Germany.
Alison NorthBio-Imaging Resource Center, The Rockefeller University, New York, NY USA.
Adam C ParslowBaker Institute Microscopy Platform, Baker Heart and Diabetes Institute, Melbourne, VIC, 3004, Australia.
Alex Payne-DwyerSchool of Physics, Engineering and Technology, University of York, Heslington, YO10 5DD, UK.
Laure PlantardFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Rizwan AliKing Abdullah International Medical Research Center (KAIMRC), Medical Research Core Facility and Platforms (MRCFP), King Saud bin Abdulaziz University for Health Sciences (KSAU-HS), Ministry of National Guard Health Affairs (MNGHA), Riyadh 11481, Saudi Arabia.
Britta Schroth-DiezLight Microscopy Facility, Max Planck Institute of Molecular Cell Biology and Genetics Dresden, Pfotenhauerstrasse 108, 01307 Dresden, Germany.
Lucas Schützariadne.ai (Germany) GmbH, 69115 Heidelberg, Germany.
Ryan T ScottSpace Biosciences Division, NASA Ames Research Center, Moffett Field, CA, 94035, USA.
Arne SeitzBioImaging & Optics Platform (BIOP), Ecole Polytechnique Fédérale de Lausanne (EPFL), Faculty of Life sciences (SV), CH-1015 Lausanne.
Olaf SelchowMicroscopy & BioImaging Consulting, Image Processing & Large Data Handling, Tobias-Hoppe-Strassse 3, 07548 Gera, Germany.
Ved P SharmaBio-Imaging Resource Center, The Rockefeller University, New York, NY USA.
Martin SpitalerMax Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Sathya SrinivasanImaging and Morphology Support Core, Oregon National Primate Research Center - (ONPRC - OHSU West Campus), Beaverton, Oregon 97006, USA.
Caterina Strambio-De-CastilliaProgram in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA, 01605, USA.
Douglas TaatjesDepartment of Pathology and Laboratory Medicine, Microscopy Imaging Center (RRID# SCR_018821), Center for Biomedical Shared Resources, University of Vermont, Burlington, VT 05405 USA.
Christian TischerCentre for Bioimage Analysis, EMBL Heidelberg, Meyerhofstr. 1, 69117 Heidelberg, Germany.
Helena Klara JamborNCT-UCC, Medizinische Fakultät TU Dresden, Fetscherstrasse 105, 01307 Dresden/Germany.

Funding

4D Nucleome Network Data Coordination and Integration CenterU01CA200059 · NCI · HARVARD MEDICAL SCHOOL · PI PARK, PETER J · 2015 to 2024
$24.4M
Center for Open Bioimage AnalysisP41GM135019 · NIGMS · BROAD INSTITUTE, INC. · PI CARPENTER, ANNE E., CIMINI, BETH · 2020 to 2024
$6.9M
NCI NIH HHS U01 CA200059NIGMS NIH HHS P41 GM135019
6 · The paper itself

Abstract

Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image analyses results, there are to date no unified guidelines. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here we present community-developed checklists for preparing light microscopy images and image analysis for publications. These checklists offer authors, readers, and publishers key recommendations for image formatting and annotation, color selection, data availability, and for reporting image analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby heighten the quality and explanatory power of microscopy data is in publications.

Identifiers

PMID36824427
PMCPMC9949169

What OpenQuestion holds

Textmetadata
LicenceCC BY-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.