Evidence map›Paper›PMID 36824424›Full record

ArticleArXiv2023

Unified Topological Inference for Brain Networks in Temporal Lobe Epilepsy Using the Wasserstein Distance.

Moo K Chung, Camille Garcia Ramos, Felipe Branco De Paiva, Jedidiah Mathis, Vivek Prabharakaren, Veena A Nair, Elizabeth Meyerand, Bruce P Hermann, Jeffrey R Binder, Aaron F Struck

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In one paragraph

Article in ArXiv, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Moo K ChungDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, USA.
Camille Garcia RamosDepartment of Neurology, University of Wisconsin-Madison, USA.
Felipe Branco De PaivaDepartment of Neurology, University of Wisconsin-Madison, USA.
Jedidiah MathisDepartment of Neurology, Medical College of Wisconsin, USA.
Vivek PrabharakarenDepartment of Radiology, University of Wisconsin-Madison, USA.
Veena A NairDepartment of Radiology, University of Wisconsin-Madison, USA.
Elizabeth MeyerandDepartments of Medical Physics & Biomedical Engineering, University of Wisconsin-Madison, USA.
Bruce P HermannDepartment of Neurology, University of Wisconsin-Madison, USA.
Jeffrey R BinderDepartment of Neurology, Medical College of Wisconsin, USA.
Aaron F StruckDepartment of Neurology, University of Wisconsin-Madison, USA.

Funding

The Epilepsy Connectome ProjectU01NS093650 · NINDS · MEDICAL COLLEGE OF WISCONSIN · PI BINDER, JEFFREY R, MEYERAND, MARY E. · 2015 to 2018
$5.1M
Stroke Connectome MRI Biomarkers for VCID Risk AssessmentR01NS123378 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI Nagesh Adluru, Veena A Nair · 2022 to 2026
$3.6M
PET/MR Correlates of Accelerated Aging in Chronic EpilepsyR01NS117568 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI Alan Blair McMillan, Vivek Prabhakaran · 2021 to 2026
$3.0M
Dynamic manifold-valued time series model in functional brain imagingR01EB028753 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI CHUNG, MOO K · 2020 to 2022
$942k
NIBIB NIH HHS R01 EB028753NINDS NIH HHS R01 NS117568NINDS NIH HHS R01 NS123378NINDS NIH HHS U01 NS093650
6 · The paper itself

Abstract

Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological features that persist over these scales. These features are summarized in persistence diagrams, and their dissimilarity is quantified using the Wasserstein distance. However, the Wasserstein distance does not follow a known distribution, posing challenges for the application of existing parametric statistical models. To tackle this issue, we introduce a unified topological inference framework centered on the Wasserstein distance. Our approach has no explicit model and distributional assumptions. The inference is performed in a completely data driven fashion. We apply this method to resting-state functional magnetic resonance images (rs-fMRI) of temporal lobe epilepsy patients collected from two different sites: the University of Wisconsin-Madison and the Medical College of Wisconsin. Importantly, our topological method is robust to variations due to sex and image acquisition, obviating the need to account for these variables as nuisance covariates. We successfully localize the brain regions that contribute the most to topological differences. A MATLAB package used for all analyses in this study is available at https://github.com/laplcebeltrami/PH-STAT.

Identifiers

PMID36824424
PMCPMC9949148

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.