ArticleGigaByte (Hong Kong, China)2021
Improvements in the sequencing and assembly of plant genomes.
Article in GigaByte (Hong Kong, China), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
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- PAGD: the Persea americana Genome Database and a Docker-based transcriptome analysis workflow.BMC genomics · 2026Article
- Revealing Genomic Traits and Evolutionary Insights of Oryza officinalis from Southern China Through Genome Assembly and Transcriptome Analysis.Rice (New York, N.Y.) · 2025Article
- Long-read sequencing and genome assembly of natural history collection samples and challenging specimens.Genome biology · 2025Article
- Long-read sequencing and genome assembly of natural history collection samples and challenging specimens.bioRxiv : the preprint server for biology · 2024Article
- A chromosome-level genome of mango exclusively from long-read sequence data.The plant genome · 2024Article
- Review
- Insights into the domestication of avocado and potential genetic contributors to heterodichogamy.G3 (Bethesda, Md.) · 2023Article
- Article
- Article
- De novo chromosome level assembly of a plant genome from long read sequence data.The Plant journal : for cell and molecular biology · 2022Article
- Integrated Full-Length Transcriptome and MicroRNA Sequencing Approaches Provide Insights Into Salt Tolerance in Mangrove (Frontiers in genetics · 2022Article
- Macadamia germplasm and genomic database (MacadamiaGGD): A comprehensive platform for germplasm innovation and functional genomics inFrontiers in plant science · 2022Article
- The genome of the endangeredPlant direct · 2021Article
- Representation and participation across 20 years of plant genome sequencing.Nature plants · 2021Article
- The jojoba genome reveals wide divergence of the sex chromosomes in a dioecious plant.The Plant journal : for cell and molecular biology · 2021Article
- Improvements in the sequencing and assembly of plant genomes.GigaByte (Hong Kong, China) · 2021Article
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Advances in DNA sequencing have made it easier to sequence and assemble plant genomes. Here, we extend an earlier study, and compare recent methods for long read sequencing and assembly. Updated Oxford Nanopore Technology software improved assemblies. Using more accurate sequences produced by repeated sequencing of the same molecule (Pacific Biosciences HiFi) resulted in less fragmented assembly of sequencing reads. Using data for increased genome coverage resulted in longer contigs, but reduced total assembly length and improved genome completeness. The original model species,
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Registered trials
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