Evidence map›Paper›PMID 36824277›Full record

ArticleiScience2023

Genomic evidence for adaptation to tuberculosis in the Andes before European contact.

Sophie K Joseph, Nicola Rambaldi Migliore, Anna Olivieri, Antonio Torroni, Amanda C Owings, Michael DeGiorgio, Wladimir Galarza Ordóñez, J J Ortiz Aguilú, Fabricio González-Andrade, Alessandro Achilli and 1 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Sophie K JosephDepartment of Anthropology, Emory University, Atlanta, GA 30322, USA.
Nicola Rambaldi MiglioreDepartment of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia 27100, Italy.
Anna OlivieriDepartment of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia 27100, Italy.
Antonio TorroniDepartment of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia 27100, Italy.
Amanda C OwingsDepartment of Biology, University of Iowa, Iowa City, IA 52242, USA.
Michael DeGiorgioDepartment of Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, FL 33431, USA.
Wladimir Galarza OrdóñezCentro de Estudios, Investigaciones y Trabajos Arqueológicos (CEITA), Cuenca, Ecuador.
J J Ortiz AguilúUniversidad Técnica de Manabí, 130105 Manabí, Ecuador.
Fabricio González-AndradeTranslational Medicine Unit, Central University of Ecuador, Faculty of Medical Sciences, Iquique N14-121 y Sodiro-Itchimbia, Sector El Dorado, 170403 Quito, Ecuador.
Alessandro AchilliDepartment of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia 27100, Italy.
John LindoDepartment of Anthropology, Emory University, Atlanta, GA 30322, USA.
University of Pavia · ITEmory University · USCentral University of Ecuador · ECFlorida Atlantic University · USUniversidad Técnica de Manabí · ECUniversity of Iowa · US

Funding

Identifying complex modes of adaptation from population-genomic dataR35GM128590 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Michael DeGiorgio · 2018 to 2026
$2.8M
NIGMS NIH HHS R35 GM128590
6 · The paper itself

Abstract

Most studies focusing on human high-altitude adaptation in the Andean highlands have thus far been focused on Peruvian populations. We present high-coverage whole genomes from Indigenous people living in the Ecuadorian highlands and perform multi-method scans to detect positive natural selection. We identified regions of the genome that show signals of strong selection to both cardiovascular and hypoxia pathways, which are distinct from those uncovered in Peruvian populations. However, the strongest signals of selection were related to regions of the genome that are involved in immune function related to tuberculosis. Given our estimated timing of this selection event, the Indigenous people of Ecuador may have adapted to

Indexed as

AnthropologyEvolutionary biologyHuman genetics

Identifiers

PMID36824277
PMCPMC9941198
OpenAlexW4317786905

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.