Evidence map›Paper›PMID 36824274›Full record

ArticleiScience2023

Transcriptome, proteome, and protein synthesis within the intracellular cytomatrix.

Tattym E Shaiken, Sandra L Grimm, Mohamad Siam, Amanda Williams, Abdol-Hossein Rezaeian, Daniel Kraushaar, Emily Ricco, Matthew J Robertson, Cristian Coarfa, Antrix Jain and 5 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Tattym E ShaikenDepartment of Medicine-Gastroenterology and Hepatology Section, Michael E DeBakey Veteran's Affairs Medical Center, Baylor College of Medicine, Houston, TX 77030, USA.
Sandra L GrimmAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Mohamad SiamDepartment of Medicine-Gastroenterology and Hepatology Section, Michael E DeBakey Veteran's Affairs Medical Center, Baylor College of Medicine, Houston, TX 77030, USA.
Amanda WilliamsDepartment of Medicine-Gastroenterology and Hepatology Section, Michael E DeBakey Veteran's Affairs Medical Center, Baylor College of Medicine, Houston, TX 77030, USA.
Abdol-Hossein RezaeianPeriNuc Labs, University of Houston Technology Bridge, Houston, TX 77023, USA.
Daniel KraushaarAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Emily RiccoAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Matthew J RobertsonAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Cristian CoarfaAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Antrix JainAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Anna MalovannayaAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Fabio StossiAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Antone R OpekunDepartment of Medicine-Gastroenterology and Hepatology Section, Michael E DeBakey Veteran's Affairs Medical Center, Baylor College of Medicine, Houston, TX 77030, USA.
Alyssa P PriceDepartment of Medicine-Gastroenterology and Hepatology Section, Michael E DeBakey Veteran's Affairs Medical Center, Baylor College of Medicine, Houston, TX 77030, USA.
Julien DubrulleAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Baylor College of Medicine · USMichael E. DeBakey VA Medical Center · USUniversity of South Carolina · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI James Versalovic · 2001 to 2026
$28.3M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Casey W Wright · 2019 to 2026
$14.7M
High Throughput Genomic Sequencer at BCM Core FacilityS10OD023469 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2017 to 2017
$600k
NCI NIH HHS P30 CA125123NIDDK NIH HHS P30 DK056338NIEHS NIH HHS P30 ES030285NIH HHS S10 OD023469
6 · The paper itself

Abstract

Despite the knowledge that protein translation and various metabolic reactions that create and sustain cellular life occur in the cytoplasm, the structural organization within the cytoplasm remains unclear. Recent models indicate that cytoplasm contains viscous fluid and elastic solid phases. We separated these viscous fluid and solid elastic compartments, which we call the cytosol and cytomatrix, respectively. The distinctive composition of the cytomatrix included structural proteins, ribosomes, and metabolome enzymes. High-throughput analysis revealed unique biosynthetic pathways within the cytomatrix. Enrichment of biosynthetic pathways in the cytomatrix indicated the presence of immobilized biocatalysis. Enzymatic immobilization and segregation can surmount spatial impediments, and the local pathway segregation may form cytoplasmic organelles. Protein translation was reprogrammed within the cytomatrix under the restriction of protein synthesis by drug treatment. The cytosol and cytomatrix are an elaborately interconnected network that promotes operational flexibility in healthy cells and the survival of malignant cells.

Indexed as

Cell biologyMolecular biologyProteomicsTranscriptomics

Identifiers

PMID36824274
PMCPMC9941065
OpenAlexW4315864748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.