Evidence map›Paper›PMID 36823351›Full record

ArticleNature chemical biology2023

Depletion of creatine phosphagen energetics with a covalent creatine kinase inhibitor.

Narek Darabedian, Wenzhi Ji, Mengyang Fan, Shan Lin, Hyuk-Soo Seo, Ekaterina V Vinogradova, Tomer M Yaron, Evanna L Mills, Haopeng Xiao, Kristine Senkane and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  5. A druggable redox switch on SHP1 controls macrophage inflammation.bioRxiv : the preprint server for biology · 2026
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  9. Creatine kinase imaging (CKI) for in vivo whole-brain mapping of creatine kinase reaction kinetics.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 1 country.

Narek Darabedian *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Wenzhi Ji *Department of Chemical and Systems Biology, CHEM-H and SCI, Stanford Medical School, Stanford University, Stanford, CA, USA.
Mengyang FanDepartment of Chemical and Systems Biology, CHEM-H and SCI, Stanford Medical School, Stanford University, Stanford, CA, USA.
Shan LinDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Hyuk-Soo SeoDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0646-2102
Ekaterina V VinogradovaLaboratory of Chemical Immunology and Proteomics, The Rockefeller University, New York, NY, USA.
Tomer M YaronMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Evanna L MillsDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Haopeng XiaoDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Kristine SenkaneDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.
Emily M HuntsmanMeyer Cancer Center, Weill Cornell Medicine, New York, NY, USA.
Jared L JohnsonDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1802-6527
Jianwei CheDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4956-4811
Lewis C CantleyDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-1298-7653
Benjamin F CravattDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5330-3492
Sirano Dhe-PaganonDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0824-5929
Kimberly StegmaierDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0218-7895
Tinghu ZhangDepartment of Chemical and Systems Biology, CHEM-H and SCI, Stanford Medical School, Stanford University, Stanford, CA, USA.
Nathanael S GrayDepartment of Chemical and Systems Biology, CHEM-H and SCI, Stanford Medical School, Stanford University, Stanford, CA, USA. nsgray01@stanford.edu.ORCID http://orcid.org/0000-0001-5354-7403
Edward T ChouchaniDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. edwardt_chouchani@dfci.harvard.edu.ORCID http://orcid.org/0000-0002-9776-8790
Harvard University · USStanford University · USDana-Farber Cancer Institute · USCornell University · USScripps Research Institute · USRockefeller University · US

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2017 to 2021
$10.6M
Chemical Proteomic Platforms for Radically Expanding Cancer DruggabilityR35CA231991 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI BENJAMIN F CRAVATT · 2018 to 2026
$9.5M
Integrating Transforming Approaches to Identify and Target New Vulnerabilities in CancerR35CA210030 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2016 to 2022
$7.3M
Determining mechanisms of the succinate thermogenesis pathways on UCP1-dependent and UCP1-independent thermogenesisR01DK123095 · NIDDK · DANA-FARBER CANCER INST · PI Edward Thomas Chouchani · 2019 to 2026
$4.2M
Defining the landscape and mechanisms of protein redox regulation during agingR01AG071966 · NIA · DANA-FARBER CANCER INST · PI Edward Thomas Chouchani · 2022 to 2026
$2.9M
Cancer Chemical Biology and Metabolism Training ProgramT32CA236754 · NCI · DANA-FARBER CANCER INST · PI Nika N Danial, THOMAS M ROBERTS · 2019 to 2026
$2.6M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Mechanistic characterization of the anti-inflammatory function of thermogenic fat for the treatment of metabolic disordersR00DK123321 · NIDDK · DANA-FARBER CANCER INST · PI MILLS, EVANNA LOUISA · 2022 to 2024
$737k
Chemical manipulation of creatine kinases to treat acute myeloid leukemiaR21CA259739 · NCI · DANA-FARBER CANCER INST · PI CHOUCHANI, EDWARD THOMAS · 2021 to 2021
$451k
Defining the landscape and mechanisms of protein redox regulation during agingR56AG071966 · NIA · DANA-FARBER CANCER INST · PI CHOUCHANI, EDWARD THOMAS · 2021 to 2021
$344k
NCI NIH HHS K99 CA263161NCI NIH HHS P30 CA124435NCI NIH HHS P50 CA206963NCI NIH HHS R21 CA259739NCI NIH HHS R35 CA210030NCI NIH HHS R35 CA231991NCI NIH HHS T32 CA236754NIA NIH HHS K99 AG073461NIA NIH HHS R01 AG071966NIA NIH HHS R56 AG071966NIDDK NIH HHS R00 DK123321NIDDK NIH HHS R01 DK123095NIGMS NIH HHS P30 GM124165NIH HHS S10 OD021527
6 · The paper itself

Abstract

Creatine kinases (CKs) provide local ATP production in periods of elevated energetic demand, such as during rapid anabolism and growth. Thus, creatine energetics has emerged as a major metabolic liability in many rapidly proliferating cancers. Whether CKs can be targeted therapeutically is unknown because no potent or selective CK inhibitors have been developed. Here we leverage an active site cysteine present in all CK isoforms to develop a selective covalent inhibitor of creatine phosphagen energetics, CKi. Using deep chemoproteomics, we discover that CKi selectively engages the active site cysteine of CKs in cells. A co-crystal structure of CKi with creatine kinase B indicates active site inhibition that prevents bidirectional phosphotransfer. In cells, CKi and its analogs rapidly and selectively deplete creatine phosphate, and drive toxicity selectively in CK-dependent acute myeloid leukemia. Finally, we use CKi to uncover an essential role for CKs in the regulation of proinflammatory cytokine production in macrophages.

Indexed as

CreatineCreatine KinaseCysteinePhosphotransferasesProtein IsoformsCreatineCreatine KinaseCysteinePhosphotransferasesProtein Isoforms

Identifiers

PMID36823351
PMCPMC10330000
OpenAlexW4321611299

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.