Evidence map›Paper›PMID 36823331›Full record

ArticleNature methods2023

Outbreak.info Research Library: a standardized, searchable platform to discover and explore COVID-19 resources.

Ginger Tsueng, Julia L Mullen, Manar Alkuzweny, Marco Cano, Benjamin Rush, Emily Haag, Jason Lin, Dylan J Welzel, Xinghua Zhou, Zhongchao Qian and 8 more

Abstract read
In one paragraph

Article in Nature methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Quasi-species prevalence and clinical impact of evolving SARS-CoV-2 lineages in European COVID-19 cohorts, January 2020 to February 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Ginger TsuengDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA. gtsueng@scripps.edu.ORCID http://orcid.org/0000-0001-9536-9115
Julia L MullenDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.
Manar AlkuzwenyDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA.ORCID http://orcid.org/0000-0002-6069-5778
Marco CanoDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.
Benjamin RushOcuvera, Lincoln, NE, USA.
Emily HaagDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.
Jason LinDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.
Dylan J WelzelDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.
Xinghua ZhouDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-9119-3906
Zhongchao QianDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-8334-9467
Alaa Abdel LatifDepartment of Immunology and Microbiology, the Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-3713-8420
Emory HufbauerDepartment of Immunology and Microbiology, the Scripps Research Institute, La Jolla, CA, USA.
Mark ZellerDepartment of Immunology and Microbiology, the Scripps Research Institute, La Jolla, CA, USA.
Kristian G AndersenDepartment of Immunology and Microbiology, the Scripps Research Institute, La Jolla, CA, USA.
Chunlei WuDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-2629-6124
Andrew I SuDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA.
Karthik GangavarapuDepartment of Immunology and Microbiology, the Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-5027-3440
Laura D HughesDepartment of Integrative, Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA. lhughes@scripps.edu.ORCID http://orcid.org/0000-0003-1718-6676

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Technology CoreU19AI135995 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Laura D. Hughes · 2018 to 2026
$32.0M
CD2H - The National COVID Cohort Collaborative (N3C) IDeA CTR CollaborationU24TR002306 · NCATS · UNIVERSITY OF COLORADO DENVER · PI CHUTE, CHRISTOPHER G, EICHMANN, DAVID A. · 2017 to 2021
$28.9M
RADx-Rad Discoveries & Data: Consortium Coordination Center Program OrganizationU24LM013755 · NLM · YALE UNIVERSITY · PI ARONOFF-SPENCER, ELIAH S, OHNO-MACHADO, LUCILA · 2021 to 2023
$23.3M
BioGPS: Extensible Web 2.0 gene portal for structured and unstructured annotationR01GM083924 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SU, ANDREW I, WU, CHUNLEI · 2008 to 2021
$5.6M
CDC HHS 75D30120C09795NCATS NIH HHS U24 TR002306NCI NIH HHS 75N91019D00024NIAID NIH HHS U19 AI135995NIAID NIH HHS U19 AI135995-03S2NIGMS NIH HHS R01 GM083924NIGMS NIH HHS R01GM083924NLM NIH HHS U24 LM013755
6 · The paper itself

Abstract

Outbreak.info Research Library is a standardized, searchable interface of coronavirus disease 2019 (COVID-19) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) publications, clinical trials, datasets, protocols and other resources, built with a reusable framework. We developed a rigorous schema to enforce consistency across different sources and resource types and linked related resources. Researchers can quickly search the latest research across data repositories, regardless of resource type or repository location, via a search interface, public application programming interface (API) and R package.

Indexed as

COVID-19Disease OutbreaksHumansSARS-CoV-2

Identifiers

PMID36823331
PMCPMC10393269

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.