ArticleNature communications2023
Seasonal activities of the phyllosphere microbiome of perennial crops.
Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
26 citing papers in PubMed.
- Exploring the antifungal activity of the wheat microbiome.Biochemical Society transactions · 2026Review
- Endophytes Across the Plant Life Cycle: Potential Roles in Plant Protection, Litter Decomposition, and Nutrient Cycling.Plants (Basel, Switzerland) · 2026Review
- Advancing Plant Microbiome Research Through Host DNA Depletion Techniques.Plant biotechnology journal · 2026Review
- The bark latent fungus Botryosphaeria dothidea exacerbates branch dieback following the infection with Verticillium dahliae.Stress biology · 2026Article
- Rhizosphere microbial shifts drive amygdalin detoxification and jasmonate-mediated alleviation of peach autotoxicity.The ISME journal · 2026Article
- Comparative analysis of rhizosphere microbiomes of cultivated and wild rice under contrasting field water regimes.Microbiology spectrum · 2025Article
- Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome.Microbiome · 2025Article
- Denitrification is a community trait with partial pathways dominating across microbial genomes and biomes.Nature communications · 2025Article
- Seasonal Differences in Effects of Microbial Communities on Duckweed Traits.Ecology and evolution · 2025Article
- Article
- Environment selected microbial function rather than taxonomic species in a plateau saline-alkaline wetland.Applied and environmental microbiology · 2025Article
- A framework for utilizing leaf-associated microbes to achieve conservation and restoration goals.mSphere · 2025Article
- Distribution patterns of fungal community diversity in the dominant tree speciesMicrobiology spectrum · 2025Article
- Plant Genetic Bases Associated With Microbiota Descriptors Shed Light Into a Novel Holobiont Generalist Genes Theory.Environmental microbiology · 2025Article
- Role of metabolism, resistance, and/or antagonism as drivers of endomicrobiomes assemblage in Origanum heracleoticum L.Communications biology · 2025Article
- Impact of seasonal changes on root-associated microbial communities among phreatophytes of three basins in desert ecosystem.Frontiers in plant science · 2025Article
- Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air.Nature communications · 2024Article
- Metabolome-driven microbiome assembly determining the health of ginger crop (Zingiber officinale L. Roscoe) against rhizome rot.Microbiome · 2024Article
- Hitching a Ride in the Phyllosphere: Surfactant Production of Pseudomonas spp. Causes Co-swarming of Pantoea eucalypti 299R.Microbial ecology · 2024Article
- Microbial species pool-mediated diazotrophic community assembly in crop microbiomes during plant development.mSystems · 2024Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding the interactions between plants and microorganisms can inform microbiome management to enhance crop productivity and resilience to stress. Here, we apply a genome-centric approach to identify ecologically important leaf microbiome members on replicated plots of field-grown switchgrass and miscanthus, and to quantify their activities over two growing seasons for switchgrass. We use metagenome and metatranscriptome sequencing and curate 40 medium- and high-quality metagenome-assembled-genomes (MAGs). We find that classes represented by these MAGs (Actinomycetia, Alpha- and Gamma- Proteobacteria, and Bacteroidota) are active in the late season, and upregulate transcripts for short-chain dehydrogenase, molybdopterin oxidoreductase, and polyketide cyclase. Stress-associated pathways are expressed for most MAGs, suggesting engagement with the host environment. We also detect seasonally activated biosynthetic pathways for terpenes and various non-ribosomal peptide pathways that are poorly annotated. Our findings support that leaf-associated bacterial populations are seasonally dynamic and responsive to host cues.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.