Evidence map›Paper›PMID 36821371›Full record

ArticleJCI insight2023

EPIREGULIN creates a developmental niche for spatially organized human intestinal enteroids.

Charlie J Childs, Emily M Holloway, Caden W Sweet, Yu-Hwai Tsai, Angeline Wu, Abigail Vallie, Madeline K Eiken, Meghan M Capeling, Rachel K Zwick, Brisa Palikuqi and 12 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Regional organization of nutrient absorption across the small intestine.Nature reviews. Gastroenterology & hepatology · 2026
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  3. Building and regenerating intestines by manipulating intestinal stem cells.Nature reviews. Gastroenterology & hepatology · 2026
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  7. The role of kinase domain dimerization in EGFR activation.Structure (London, England : 1993) · 2026
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  14. Article
  15. Structure and organization of full-length epidermal growth factor receptor in extracellular vesicles by cryo-electron tomography.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Review
  19. BEST4American journal of physiology. Cell physiology · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Charlie J ChildsDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Emily M HollowayDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Caden W SweetDivision of Gastroenterology and Hepatology, Department of Internal Medicine, and.
Yu-Hwai TsaiDivision of Gastroenterology and Hepatology, Department of Internal Medicine, and.
Angeline WuDivision of Gastroenterology and Hepatology, Department of Internal Medicine, and.
Abigail VallieGraduate Program in Cellular and Molecular Biology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Madeline K EikenDepartment of Biomedical Engineering, University of Michigan Medical School and University of Michigan College of Engineering, Ann Arbor, Michigan, USA.
Meghan M CapelingDepartment of Biomedical Engineering, University of Michigan Medical School and University of Michigan College of Engineering, Ann Arbor, Michigan, USA.
Rachel K ZwickProgram in Craniofacial Biology and Department of Orofacial Sciences, University of California, San Francisco, San Francisco, California, USA.
Brisa PalikuqiProgram in Craniofacial Biology and Department of Orofacial Sciences, University of California, San Francisco, San Francisco, California, USA.
Coralie TrentesauxProgram in Craniofacial Biology and Department of Orofacial Sciences, University of California, San Francisco, San Francisco, California, USA.
Joshua H WuDivision of Gastroenterology and Hepatology, Department of Internal Medicine, and.
Oscar Pellón-CardenasNew Jersey Medical School, Rutgers, The State University of New Jersey, Newark, New Jersey, USA.
Charles J ZhangDepartment of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, Michigan, USA.
Ian GlassGenetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, USA.
Claudia LoebelDepartment of Biomedical Engineering, University of Michigan Medical School and University of Michigan College of Engineering, Ann Arbor, Michigan, USA.
Qianhui YuRoche Institute for Translational Bioengineering (ITB), Roche Pharma Research and Early Development, Roche Innovation Center, Basel, Switzerland.
J Gray CampRoche Institute for Translational Bioengineering (ITB), Roche Pharma Research and Early Development, Roche Innovation Center, Basel, Switzerland.
Jonathan Z SextonDivision of Gastroenterology and Hepatology, Department of Internal Medicine, and.
Ophir D KleinProgram in Craniofacial Biology and Department of Orofacial Sciences, University of California, San Francisco, San Francisco, California, USA.
Michael P VerziNew Jersey Medical School, Rutgers, The State University of New Jersey, Newark, New Jersey, USA.
Jason R SpenceDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
University of Michigan · USUniversity of California, San Francisco · USRoche (Switzerland) · CHRutgers, The State University of New Jersey · USUniversity of Washington · US

Funding

University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OWYANG, CHUNG · 1986 to 2021
$22.5M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
Intestinal Stem Cell Consortium Coordinating CenterU01DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2009 to 2018
$6.5M
Niche support of human intestinal stem cellsU01DK103141 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPENCE, JASON · 2014 to 2023
$3.9M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Limited Competition for the Continuation of the Intestinal Stem Cell Consortium Coordinating CenterU24DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2019 to 2023
$2.3M
Human iPSC intestine mimetics with integrated mesenchymal, endothelial and enteric nervous tissueR01DK137806 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jason Spence · 2024 to 2026
$1.5M
Investigating the Role of Epiregulin During Human Intestinal DevelopmentF31DK136196 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHILDS, CHARLIE · 2023 to 2024
$96k
NICHD NIH HHS R24 HD000836NIDDK NIH HHS F31 DK136196NIDDK NIH HHS P30 DK034933NIDDK NIH HHS R01 DK137806NIDDK NIH HHS U01 DK085532NIDDK NIH HHS U01 DK103141NIDDK NIH HHS U24 DK085532NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Epithelial organoids derived from intestinal tissue, called enteroids, recapitulate many aspects of the organ in vitro and can be used for biological discovery, personalized medicine, and drug development. Here, we interrogated the cell signaling environment within the developing human intestine to identify niche cues that may be important for epithelial development and homeostasis. We identified an EGF family member, EPIREGULIN (EREG), which is robustly expressed in the developing human crypt. Enteroids generated from the developing human intestine grown in standard culture conditions, which contain EGF, are dominated by stem and progenitor cells and feature little differentiation and no spatial organization. Our results demonstrate that EREG can replace EGF in vitro, and EREG leads to spatially resolved enteroids that feature budded and proliferative crypt domains and a differentiated villus-like central lumen. Multiomic (transcriptome plus epigenome) profiling of native crypts, EGF-grown enteroids, and EREG-grown enteroids showed that EGF enteroids have an altered chromatin landscape that is dependent on EGF concentration, downregulate the master intestinal transcription factor CDX2, and ectopically express stomach genes, a phenomenon that is reversible. This is in contrast to EREG-grown enteroids, which remain intestine like in culture. Thus, EREG creates a homeostatic intestinal niche in vitro, enabling interrogation of stem cell function, cellular differentiation, and disease modeling.

Indexed as

Epidermal Growth FactorIntestinesCell DifferentiationEpiregulinHumansIntestinal MucosaEpidermal Growth FactorEpiregulinDevelopmentHuman stem cellsOrganogenesisStem cells

Identifiers

PMID36821371
PMCPMC10070114
OpenAlexW4321611493

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.