Evidence map›Paper›PMID 36819777›Full record

ArticleOxidative medicine and cellular longevity2023

Establishment of Ferroptosis-Related Key Gene Signature and Its Validation in Compression-Induced Intervertebral Disc Degeneration Rats.

Jiangbo Guo, Yilin Yang, Junjie Niu, Zongping Luo, Qin Shi, Huilin Yang

Open access · hybridAbstract read
In one paragraph

Article in Oxidative medicine and cellular longevity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jiangbo GuoDepartment of Orthopaedics, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, China.ORCID https://orcid.org/0000-0001-7971-5372
Yilin YangDepartment of Orthopaedics, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, China.
Junjie NiuDepartment of Orthopaedics, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, China.
Zongping LuoDepartment of Orthopaedics, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, China.ORCID https://orcid.org/0000-0002-0617-2597
Qin ShiDepartment of Orthopaedics, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, China.ORCID https://orcid.org/0000-0002-9403-752X
Huilin YangDepartment of Orthopaedics, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215000, China.ORCID https://orcid.org/0000-0002-9459-7981
Soochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell death and functional loss of nucleus pulposus cell play essential roles in intervertebral disc degeneration (IDD). Ferroptosis is a newly identified cell death type, and its role in IDD is still under investigation. Identifying the key genes of ferroptosis in IDD helps to identify the therapeutic targets of IDD. In this study, we downloaded the human IDD mRNA microarray data from the Gene Expression Omnibus and ferroptosis genes from FerrDb, then performed a series of analyses using strict bioinformatics algorithms. In general, we obtained 40 ferroptosis-related differential expression genes (FerrDEGs) and identified six ferroptosis key gene signatures, namely, ATF3, EIF2S1, AR, NQO1, TXNIP, and AKR1C3. In addition, enrichment analysis of the FerrDEGs was conducted, the protein-protein interaction network was constructed, the correlations between ferroptosis key genes and immune infiltrating cells were analyzed, and the lncRNA-miRNA-mRNA ceRNA network was constructed. In particular, ATF3 and EIF2S1 showed the strongest correlation with immune cell function, which might lead to the development of IDD. Finally, the expressions of ferroptosis key genes were verified in the rat compression-induced IDD. In conclusion, this preliminary study analyzed and verified the mechanism of ferroptosis in IDD, laid a foundation for the follow-up study of the mechanism of ferroptosis in IDD, and provided new targets for preventing and delaying IDD.

Indexed as

FerroptosisIntervertebral DiscIntervertebral Disc DegenerationMicroRNAsAnimalsCell Cycle ProteinsFollow-Up StudiesGene Expression ProfilingHumansRatsRNA, MessengerCell Cycle ProteinsMicroRNAsRNA, MessengerTXNIP protein, rat

Identifiers

PMID36819777
PMCPMC9937767
OpenAlexW4319877698

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.