Evidence map›Paper›PMID 36819744›Full record

ArticleSynthetic biology (Oxford, England)2023

Automated cell segmentation for reproducibility in bioimage analysis.

Michael C Robitaille, Jeff M Byers, Joseph A Christodoulides, Marc P Raphael

Open access · goldAbstract read
In one paragraph

Article in Synthetic biology (Oxford, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Special issue: reproducibility in synthetic biology.Synthetic biology (Oxford, England) · 2023
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael C RobitailleMaterials Science and Technology Division, U.S. Naval Research Laboratory, Washington, DC, USA.
Jeff M ByersMaterials Science and Technology Division, U.S. Naval Research Laboratory, Washington, DC, USA.
Joseph A ChristodoulidesMaterials Science and Technology Division, U.S. Naval Research Laboratory, Washington, DC, USA.
Marc P RaphaelMaterials Science and Technology Division, U.S. Naval Research Laboratory, Washington, DC, USA.ORCID https://orcid.org/0000-0003-1794-5193
United States Naval Research Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Live-cell imaging is extremely common in synthetic biology research, but its ability to be applied reproducibly across laboratories can be hindered by a lack of standardized image analysis. Here, we introduce a novel cell segmentation method developed as part of a broader Independent Verification & Validation (IV&V) program aimed at characterizing engineered

Indexed as

automated image analysiscell segmentationreproducibilityself-supervised learning

Identifiers

PMID36819744
PMCPMC9933842
OpenAlexW4318613255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.