Evidence map›Paper›PMID 36818781›Full record

ArticleApplications in plant sciences

DNA release from plant tissue using focused ultrasound extraction (FUSE).

Alexia Stettinius, Hal Holmes, Qian Zhang, Isabelle Mehochko, Misa Winters, Ruby Hutchison, Adam Maxwell, Jason Holliday, Eli Vlaisavljevich

Abstract read
In one paragraph

Article in Applications in plant sciences. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Histotripsy: A Method for Mechanical Tissue Ablation with Ultrasound.Annual review of biomedical engineering · 2024
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alexia StettiniusDepartment of Biomedical Engineering and Mechanics Virginia Polytechnic Institute and State University Blacksburg Virginia USA.ORCID 0000-0001-6499-5797
Hal HolmesDepartment of Biomedical Engineering and Mechanics Virginia Polytechnic Institute and State University Blacksburg Virginia USA.ORCID 0000-0001-7534-4463
Qian ZhangDepartment of Forest Resources and Environmental Conservation Virginia Polytechnic Institute and State University Blacksburg Virginia USA.
Isabelle MehochkoDepartment of Biomedical Engineering and Mechanics Virginia Polytechnic Institute and State University Blacksburg Virginia USA.
Misa WintersConservation X Labs Seattle Washington USA.
Ruby HutchisonDepartment of Biomedical Engineering and Mechanics Virginia Polytechnic Institute and State University Blacksburg Virginia USA.
Adam MaxwellDepartment of Urology University of Washington Seattle Washington USA.
Jason HollidayDepartment of Forest Resources and Environmental Conservation Virginia Polytechnic Institute and State University Blacksburg Virginia USA.
Eli VlaisavljevichDepartment of Biomedical Engineering and Mechanics Virginia Polytechnic Institute and State University Blacksburg Virginia USA.ORCID 0000-0002-4097-6257

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Premise: Sample preparation in genomics is a critical step that is often overlooked in molecular workflows and impacts the success of downstream genetic applications. This study explores the use of a recently developed focused ultrasound extraction (FUSE) technique to enable the rapid release of DNA from plant tissues for genetic analysis. Methods: FUSE generates a dense acoustic cavitation bubble cloud that pulverizes targeted tissue into acellular debris. This technique was applied to leaf samples of American chestnut ( Results: We observed that FUSE can extract high quantities of DNA in 9-15 min, compared to the 30 min required for control DNA extraction methods. FUSE extracted DNA quantities of 24.33 ± 6.51 ng/mg and 35.32 ± 9.21 ng/mg from American chestnut and red maple, respectively, while control methods yielded 6.22 ± 0.87 ng/mg and 11.51 ± 1.95 ng/mg, respectively. The quality of the DNA released by FUSE allowed for successful amplification and next-generation sequencing. Discussion: These results indicate that FUSE can improve DNA extraction efficiency for leaf tissues. Continued development of this technology aims to adapt to field-deployable systems to increase the cataloging of genetic biodiversity, particularly in low-resource biodiversity hotspots.

Indexed as

DNA extractionfocused ultrasoundgenomicsplant genetics

Identifiers

PMID36818781
PMCPMC9934592

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.