Evidence map›Paper›PMID 36814938›Full record

ArticleVirus evolution2023

Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals.

Katarina M Braun, Luis A Haddock Iii, Chelsea M Crooks, Gabrielle L Barry, Joseph Lalli, Gabriele Neumann, Tokiko Watanabe, Masaki Imai, Seiya Yamayoshi, Mutsumi Ito and 4 more

Open access · goldAbstract read
In one paragraph

Article in Virus evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Deliberating the scientific evidence base for influenza transmission to raw milk consumers.Risk analysis : an official publication of the Society for Risk Analysis · 2025
    Review
  6. Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Katarina M BraunAIDS Vaccine Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 585 Science Dr. Madison, WI 53711, USA.
Luis A Haddock IiiAIDS Vaccine Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 585 Science Dr. Madison, WI 53711, USA.ORCID https://orcid.org/0000-0001-8916-5693
Chelsea M CrooksAIDS Vaccine Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 585 Science Dr. Madison, WI 53711, USA.
Gabrielle L BarryAIDS Vaccine Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 585 Science Dr. Madison, WI 53711, USA.
Joseph LalliDepartment of Genetics, University of Wisconsin-Madison, 425 Henry Mall Madison, WI 53706, US.
Gabriele NeumannInfluenza Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 575 Science Dr. Madison, WI 53711, USA.
Tokiko WatanabeDivision of Virology, Institute of Medical Science, University of Tokyo, 4 Chome-6-1 Shirokanedai Minato City, Tokyo 108-0071, Japan.
Masaki ImaiDivision of Virology, Institute of Medical Science, University of Tokyo, 4 Chome-6-1 Shirokanedai Minato City, Tokyo 108-0071, Japan.
Seiya YamayoshiDivision of Virology, Institute of Medical Science, University of Tokyo, 4 Chome-6-1 Shirokanedai Minato City, Tokyo 108-0071, Japan.ORCID https://orcid.org/0000-0001-7768-5157
Mutsumi ItoDivision of Virology, Institute of Medical Science, University of Tokyo, 4 Chome-6-1 Shirokanedai Minato City, Tokyo 108-0071, Japan.
Louise H MonclaDepartment of Pathobiology, University of Pennsylvania, 3800 Spruce Street Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0001-5722-1988
Katia KoelleDepartment of Biology, Emory University, 1510 Clifton Road NE Atlanta, GA 30322, USA.ORCID https://orcid.org/0000-0002-0254-6141
Yoshihiro KawaokaInfluenza Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 575 Science Dr. Madison, WI 53711, USA.
Thomas C FriedrichAIDS Vaccine Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, 585 Science Dr. Madison, WI 53711, USA.
University of Wisconsin–Madison · USTokyo University of Science · JPEmory University · USUniversity of Pennsylvania · US

Funding

Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
Integrated Training For Physician-ScientistsT32GM140935 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anna Huttenlocher, Jeniel E Nett · 2021 to 2026
$6.5M
Mechanisms of influenza transmission bottlenecks: impact on viral evolutionR01AI125392 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI FRIEDRICH, THOMAS C., MEHLE, ANDREW · 2017 to 2021
$3.4M
Quantifying the genetic and environmental factors driving avian influenza spilloverR00AI147029 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI MONCLA, LOUISE HILLIER · 2022 to 2023
$498k
Defining the role of genetic drift in within-host influenza evolutionF30AI145182 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI BRAUN, KATARINA M · 2020 to 2022
$95k
NHGRI NIH HHS T32 HG002760NIAID NIH HHS F30 AI145182NIAID NIH HHS R00 AI147029NIAID NIH HHS R01 AI125392NIGMS NIH HHS T32 GM140935
6 · The paper itself

Abstract

H7N9 avian influenza viruses (AIVs) have caused over 1,500 documented human infections since emerging in 2013. Although wild-type H7N9 AIVs can be transmitted by respiratory droplets in ferrets, they have not yet caused widespread outbreaks in humans. Previous studies have revealed molecular determinants of H7N9 AIV host switching, but little is known about potential evolutionary constraints on this process. Here, we compare patterns of sequence evolution for H7N9 AIV and mammalian H1N1 viruses during replication and transmission in ferrets. We show that three main factors-purifying selection, stochasticity, and very narrow transmission bottlenecks-combine to severely constrain the ability of H7N9 AIV to effectively adapt to mammalian hosts in isolated, acute spillover events. We find rare evidence of natural selection favoring new, potentially mammal-adapting mutations within ferrets but no evidence of natural selection acting during transmission. We conclude that human-adapted H7N9 viruses are unlikely to emerge during typical spillover infections. Our findings are instead consistent with a model in which the emergence of a human-transmissible virus would be a rare and unpredictable, though highly consequential, 'jackpot' event. Strategies to control the total number of spillover infections will limit opportunities for the virus to win this evolutionary lottery.

Indexed as

avian influenzahost adaptationtransmissionwithin-host evolution

Identifiers

PMID36814938
PMCPMC9939568
OpenAlexW4317389017

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.