Evidence map›Paper›PMID 36814844›Full record

ArticleCell reports methods2023

Embracing enzyme promiscuity with activity-based compressed biosensing.

Brandon Alexander Holt, Hong Seo Lim, Anirudh Sivakumar, Hathaichanok Phuengkham, Melanie Su, McKenzie Tuttle, Yilin Xu, Haley Liakakos, Peng Qiu, Gabriel A Kwong

Open access · goldAbstract read
In one paragraph

Article in Cell reports methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Brandon Alexander HoltWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Hong Seo LimWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Anirudh SivakumarWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Hathaichanok PhuengkhamWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Melanie SuWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
McKenzie TuttleWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Yilin XuWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Haley LiakakosWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Peng QiuWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
Gabriel A KwongWallace H. Coulter Department of Biomedical Engineering, Georgia Tech College of Engineering and Emory School of Medicine, Atlanta, GA 30332, USA.
The Wallace H. Coulter Department of Biomedical Engineering · USEmory Healthcare · US

Funding

AND-gated Synthetic Biomarkers for Early Detection of Liver MetastasisU01CA265711 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI KWONG, GABRIEL A, QIU, PENG · 2021 to 2025
$2.7M
Noninvasive and predictive biomarkers of organ transplant rejectionDP2HD091793 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI KWONG, GABRIEL A · 2016 to 2016
$2.4M
Graduate Training for Rationally Designed, Integrative Biomaterials - GT BioMATT32EB006343 · NIBIB · GEORGIA INSTITUTE OF TECHNOLOGY · PI TEMENOFF, JOHNNA S · 2008 to 2018
$2.2M
Harnessing protease activity for predictive monitoring of cancer immunotherapyR01CA237210 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI KWONG, GABRIEL A · 2019 to 2023
$1.7M
NCI NIH HHS R01 CA237210NCI NIH HHS U01 CA265711NIBIB NIH HHS T32 EB006343NICHD NIH HHS DP2 HD091793
6 · The paper itself

Abstract

The development of protease-activatable drugs and diagnostics requires identifying substrates specific to individual proteases. However, this process becomes increasingly difficult as the number of target proteases increases because most substrates are promiscuously cleaved by multiple proteases. We introduce a method-substrate libraries for compressed sensing of enzymes (SLICE)-for selecting libraries of promiscuous substrates that classify protease mixtures (1) without deconvolution of compressed signals and (2) without highly specific substrates. SLICE ranks substrate libraries using a compression score (

Indexed as

EndopeptidasesPeptide HydrolasesSubstrate SpecificityEndopeptidasesPeptide Hydrolasesactivity-based sensorcompressed sensingproteaseprotease-activatable drugssubstrate selectionsynthetic biomarker

Identifiers

PMID36814844
PMCPMC9939361
OpenAlexW4313357170

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.