Evidence map›Paper›PMID 36814682›Full record

ArticleMediators of inflammation2023

Novel Cuproptosis-Related Gene Signature for Precise Identification of High-Risk Populations in Low-Grade Gliomas.

Ping Chen, Hailing Han, Xuejie Wang, Bing Wang, Zhanfeng Wang

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Article in Mediators of inflammation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Ping ChenDepartment of Neurosurgery, The Second Affiliated Hospital of Hengyang Medical College, Hengyang, 421000 Hunan, China.ORCID https://orcid.org/0000-0002-9957-2310
Hailing HanDepartment of Radiation Oncology, The Second Hospital of Jilin University, Changchun 130022, China.ORCID https://orcid.org/0000-0001-7658-5744
Xuejie WangDepartment of Neurosurgery, China-Japan Union Hospital of Jilin University, Changchun, 130000 Jilin, China.ORCID https://orcid.org/0000-0001-5047-8430
Bing WangDepartment of Neurosurgery, The Second Affiliated Hospital of Hengyang Medical College, Hengyang, 421000 Hunan, China.ORCID https://orcid.org/0000-0003-2271-5421
Zhanfeng WangDepartment of Neurosurgery, China-Japan Union Hospital of Jilin University, Changchun, 130000 Jilin, China.ORCID https://orcid.org/0000-0003-2897-8003

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Patients with low-grade glioma (LGG) have wildly varying average lifespans. However, no effective way exists for identifying LGG patients at high risk. Cuproptosis is a recently described form of cell death associated with the abnormal aggregation of lipid acylated proteins. Few investigations have been conducted on cuproptosis-associated genes and LGG thus far. The purpose of this research is to establish a predictive model for cuproptosis-related genes in order to recognise LGG populations at high risk. Methods: We analyzed 926 LGGs from 2 public datasets, all of which were RNA sequencing datasets. On the basis of immune scores, the LGG population was split into different risk categories with X-tile. LASSO and Cox regressions were employed to filter cuproptosis-associated genes and construct prediction models. The accuracy of the predictive models was measured by using TCGA internal validation set and the CGGA external validation set. In addition, LGG immune cell infiltration was viewed using CIBERSORT and ssGSEA algorithms and correlation analysis was done with cuproptosis-related genes. Finally, immune escape capacity in LGG low- and high-risk groups was evaluated using the TIDE method. Results: The prediction model constructed by four cuproptosis-related genes was used to identify high-risk populations in LGG. It performed well in training and all validation sets (AUC values: 0.915, 0.894, and 0.774). Meanwhile, we found that FDX1 and ATP7A in the four cuproptosis-related genes were positively correlated with immune response, while GCSH and ATP7B were opposite. In addition, the high immune score group had a lower TIDE score, indicating that their immune escape capacity was weak. Conclusion: High-risk individuals in LGG can be reliably identified by the model based on cuproptosis-related genes. Furthermore, cuproptosis is closely related to tumor immune microenvironment, which gives a novel approach to treating LGG.

Indexed as

AlgorithmsApoptosisGliomaCell DeathCopperHumansTumor MicroenvironmentCopper

Identifiers

PMID36814682
PMCPMC9940981

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