Evidence map›Paper›PMID 36814384›Full record

ArticlePlant communications2023

A chromosome-level genome assembly for Erianthus fulvus provides insights into its biofuel potential and facilitates breeding for improvement of sugarcane.

Ling Kui, Aasim Majeed, Xianhong Wang, Zijiang Yang, Jian Chen, Lilian He, Yining Di, Xuzhen Li, Zhenfeng Qian, Yinming Jiao and 17 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  11. The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 3 countries.

Ling KuiSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; Shenzhen Qianhai Shekou Free Trade Zone Hospital, Shenzhen 518067, China.
Aasim MajeedPlant Molecular Genetics Laboratory, School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India.
Xianhong WangSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; College of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China; The Key Laboratory of Crop Production and Smart Agriculture of Yunnan Province, Kunming, Yunnan 650201, China.
Zijiang YangCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Jian ChenInternational Genome Center, Jiangsu University, Zhenjiang, Jiangsu 212013, China.
Lilian HeSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; College of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Yining DiCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Xuzhen LiState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan 650201, China; Yunnan Plateau Characteristic Agriculture Industry Research Institute, Kunming, Yunnan 650201, China.
Zhenfeng QianCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Yinming JiaoShenzhen Qianhai Shekou Free Trade Zone Hospital, Shenzhen 518067, China.
Guoyun WangShenzhen Qianhai Shekou Free Trade Zone Hospital, Shenzhen 518067, China.
Lufeng LiuSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; The Key Laboratory of Crop Production and Smart Agriculture of Yunnan Province, Kunming, Yunnan 650201, China.
Rong XuCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Shujie GuCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Qinghui YangSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; College of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Shuying ChenSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; College of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Hongbo LouSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; College of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Yu MengCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Linyan XieCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Fu XuCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Qingqing ShenCollege of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China.
Amit SinghInstitute of Molecular Biosciences, University of Graz, 8010 Graz, Austria.
Karl GruberInstitute of Molecular Biosciences, University of Graz, 8010 Graz, Austria.
Yunbing PanState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan 650201, China; Yunnan Plateau Characteristic Agriculture Industry Research Institute, Kunming, Yunnan 650201, China.
Tingting HaoState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan 650201, China; Yunnan Plateau Characteristic Agriculture Industry Research Institute, Kunming, Yunnan 650201, China.
Yang DongState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan 650201, China; Yunnan Plateau Characteristic Agriculture Industry Research Institute, Kunming, Yunnan 650201, China. Electronic address: loyalyang@163.com.
Fusheng LiSugarcane Research Institute of Yunnan Agricultural University, Kunming, Yunnan 650201, China; College of Agronomy and Biotechnology of Yunnan Agricultural University, Kunming, Yunnan 650201, China; The Key Laboratory of Crop Production and Smart Agriculture of Yunnan Province, Kunming, Yunnan 650201, China. Electronic address: lfs810@sina.com.
Yunnan Agricultural University · CNGuangzhou Development Zone Hospital · CNUniversity of Graz · ATChinese National Human Genome Center at Shanghai · CNPunjab Agricultural University · IN

Funding

Austrian Science Fund FWF DOC 46
6 · The paper itself

Abstract

Erianthus produces substantial biomass, exhibits a good Brix value, and shows wide environmental adaptability, making it a potential biofuel plant. In contrast to closely related sorghum and sugarcane, Erianthus can grow in degraded soils, thus releasing pressure on agricultural lands used for biofuel production. However, the lack of genomic resources for Erianthus hinders its genetic improvement, thus limiting its potential for biofuel production. In the present study, we generated a chromosome-scale reference genome for Erianthus fulvus Nees. The genome size estimated by flow cytometry was 937 Mb, and the assembled genome size was 902 Mb, covering 96.26% of the estimated genome size. A total of 35 065 protein-coding genes were predicted, and 67.89% of the genome was found to be repetitive. A recent whole-genome duplication occurred approximately 74.10 million years ago in the E. fulvus genome. Phylogenetic analysis showed that E. fulvus is evolutionarily closer to S. spontaneum and diverged after S. bicolor. Three of the 10 chromosomes of E. fulvus formed through rearrangements of ancestral chromosomes. Phylogenetic reconstruction of the Saccharum complex revealed a polyphyletic origin of the complex and a sister relationship of E. fulvus with Saccharum sp., excluding S. arundinaceum. On the basis of the four amino acid residues that provide substrate specificity, the E. fulvus SWEET proteins were classified as mono- and disaccharide sugar transporters. Ortho-QTL genes identified for 10 biofuel-related traits may aid in the rapid screening of E. fulvus populations to enhance breeding programs for improved biofuel production. The results of this study provide valuable insights for breeding programs aimed at improving biofuel production in E. fulvus and enhancing sugarcane introgression programs.

Indexed as

SaccharumBiofuelsChromosomes, PlantPhylogenyPlant BreedingBiofuelsbiofuelcold stressErianthus fulvusQTLsreference genomeSWEET family

Identifiers

PMID36814384
PMCPMC10363513
OpenAlexW4321502901

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.