Evidence map›Paper›PMID 36813911›Full record

ArticleThe ISME journal2023

Cell aggregation is associated with enzyme secretion strategies in marine polysaccharide-degrading bacteria.

Glen D'Souza, Ali Ebrahimi, Astrid Stubbusch, Michael Daniels, Johannes Keegstra, Roman Stocker, Otto Cordero, Martin Ackermann

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Physical encounters impose a consistency-amount trade-off on bacterial group formation in marine environments.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Stochastic resilience enables particle foraging in oligotrophic marine environments.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  3. Review
  4. Hypersensitivity of chitin degradation to initial species densities due to monomer diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Deletion of theeLife · 2026
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  7. HABS-BLOCKS© InhibitedMicroorganisms · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Minorities drive growth resumption in cross-feeding microbial communities.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Interspecies interactions determine growth dynamics of biopolymer-degrading populations in microbial communities.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Phenotypic and metabolic adaptations ofFrontiers in microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Glen D'SouzaMicrobial Systems Ecology Group, Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Sciences, ETH Zurich, 8006, Zurich, Switzerland. glengeralddsouza@gmail.com.ORCID 0000-0002-9123-101X
Ali EbrahimiDepartment of Civil and Environmental Engineering, MIT, Cambridge, MA, 02139, USA.
Astrid StubbuschMicrobial Systems Ecology Group, Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Sciences, ETH Zurich, 8006, Zurich, Switzerland.ORCID 0000-0003-4767-2712
Michael DanielsMicrobial Systems Ecology Group, Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Sciences, ETH Zurich, 8006, Zurich, Switzerland.ORCID 0000-0002-0456-1214
Johannes KeegstraInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093, Zurich, Switzerland.ORCID 0000-0002-8877-4881
Roman StockerInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093, Zurich, Switzerland.ORCID 0000-0002-3199-0508
Otto CorderoDepartment of Civil and Environmental Engineering, MIT, Cambridge, MA, 02139, USA.ORCID 0000-0002-2695-270X
Martin AckermannMicrobial Systems Ecology Group, Institute of Biogeochemistry and Pollutant Dynamics, Department of Environmental Systems Sciences, ETH Zurich, 8006, Zurich, Switzerland.
ETH Zurich · CHIIT@MIT · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polysaccharide breakdown by bacteria requires the activity of enzymes that degrade polymers either intra- or extra-cellularly. The latter mechanism generates a localized pool of breakdown products that are accessible to the enzyme producers themselves as well as to other organisms. Marine bacterial taxa often show marked differences in the production and secretion of degradative enzymes that break down polysaccharides. These differences can have profound effects on the pool of diffusible breakdown products and hence on the ecological dynamics. However, the consequences of differences in enzymatic secretions on cellular growth dynamics and interactions are unclear. Here we study growth dynamics of single cells within populations of marine Vibrionaceae strains that grow on the abundant marine polymer alginate, using microfluidics coupled to quantitative single-cell analysis and mathematical modelling. We find that strains that have low extracellular secretions of alginate lyases aggregate more strongly than strains that secrete high levels of enzymes. One plausible reason for this observation is that low secretors require a higher cellular density to achieve maximal growth rates in comparison with high secretors. Our findings indicate that increased aggregation increases intercellular synergy amongst cells of low-secreting strains. By mathematically modelling the impact of the level of degradative enzyme secretion on the rate of diffusive oligomer loss, we find that enzymatic secretion capability modulates the propensity of cells within clonal populations to cooperate or compete with each other. Our experiments and models demonstrate that enzymatic secretion capabilities can be linked with the propensity of cell aggregation in marine bacteria that extracellularly catabolize polysaccharides.

Indexed as

AlginatesPolysaccharidesBacteriaCarbohydrate MetabolismAlginatesPolysaccharides

Identifiers

PMID36813911
PMCPMC10119383
OpenAlexW4321489406

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.