Evidence map›Paper›PMID 36813787›Full record

ArticleScientific reports2023

Comparison of RT-qPCR and RT-ddPCR with Rift valley fever virus (RVFV) RNA.

Changwoo Park, Dongju Park, Zohaib Ul Hassan, Sang Ho Choi, Seil Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. An Introduction to Rift Valley Fever Virus.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Changwoo ParkMicrobiological Analysis Team, Group for Biometrology, Korea Research Institute of Standards and Science, Daejeon, 34113, Republic of Korea.
Dongju ParkTheragen Bio Co., Ltd., Seoul, 16229, Republic of Korea.
Zohaib Ul HassanMicrobiological Analysis Team, Group for Biometrology, Korea Research Institute of Standards and Science, Daejeon, 34113, Republic of Korea.
Sang Ho ChoiDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea. choish@snu.ac.kr.
Seil KimMicrobiological Analysis Team, Group for Biometrology, Korea Research Institute of Standards and Science, Daejeon, 34113, Republic of Korea. stapler@kriss.re.kr.
Korea Research Institute of Chemical Technology · KRKorea Research Institute of Standards and Science · KRSeoul National University · KRTheragen · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rift valley fever (RVF) is an important zoonotic disease caused by the Rift valley fever virus (RVFV) which can affect ruminants and humans. In this study, a comparison was done of the reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and reverse transcription-droplet digital PCR (RT-ddPCR) assays with synthesized RVFV RNA, cultured viral RNA, and mock clinical RVFV RNA samples. The genomic segments (L, M, and S) of three RVFV strains (BIME01, Kenya56, and ZH548) were synthesized and used as templates for in vitro transcription (IVT). Both the RT-qPCR and RT-ddPCR assays for RVFV did not react with any of the negative reference viral genomes. Thus, both the RT-qPCR and RT-ddPCR assays are specific to RVFV. The comparison of both the RT-qPCR and RT-ddPCR assays with serially diluted templates showed that the LoD of both assays are similar, and a concordant of the results was observed. The LoD of both assays reached the practical measurable minimum concentration. Taken altogether, the sensitivity of the RT-qPCR and RT-ddPCR assays is similar, and the material measured by RT-ddPCR can be used as a reference material for RT-qPCR.

Indexed as

Rift Valley FeverRift Valley fever virusAnimalsHumansPolymerase Chain ReactionReverse TranscriptionRNA, ViralRuminantsRNA, Viral

Identifiers

PMID36813787
PMCPMC9944419
OpenAlexW4321481621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.