Evidence map›Paper›PMID 36811888›Full record

ArticleThe Journal of cell biology2023

An interaction between β'-COP and the ArfGAP, Glo3, maintains post-Golgi cargo recycling.

Boyang Xie, Clara Guillem, Swapneeta S Date, Cameron I Cohen, Christian Jung, Amy K Kendall, Jordan T Best, Todd R Graham, Lauren P Jackson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Boyang XieDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0003-2829-9254
Clara GuillemDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0003-3570-2347
Swapneeta S DateDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0002-4086-110X
Cameron I CohenDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0002-9229-7934
Christian JungDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0002-7606-2641
Amy K KendallDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0002-6176-9177
Jordan T BestDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0003-2827-7143
Todd R GrahamDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0002-3256-2126
Lauren P JacksonDepartment of Biological Sciences, Vanderbilt University , Nashville, TN, USA.ORCID 0000-0002-3705-6126
Vanderbilt University · US

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
The molecular role of tepsin in membrane trafficking pathwaysR35GM119525 · NIGMS · VANDERBILT UNIVERSITY · PI Lauren Parker Jackson · 2016 to 2026
$4.3M
Mechanisms of membrane homeostasis through protein and lipid transportR35GM144123 · NIGMS · VANDERBILT UNIVERSITY · PI TODD R GRAHAM · 2022 to 2026
$2.4M
Mechanisms of protein transport between Golgi and endosomesR01GM118452 · NIGMS · VANDERBILT UNIVERSITY · PI GRAHAM, TODD R · 2016 to 2019
$1.4M
NIGMS NIH HHS R01 GM118452NIGMS NIH HHS R35 GM119525NIGMS NIH HHS R35 GM144123NIGMS NIH HHS T32 GM008320NIH HHS R35GM119525
6 · The paper itself

Abstract

The essential COPI coat mediates retrieval of transmembrane proteins at the Golgi and endosomes following recruitment by the small GTPase, Arf1. ArfGAP proteins regulate COPI coats, but molecular details for COPI recognition by ArfGAPs remain elusive. Biochemical and biophysical data reveal how β'-COP propeller domains directly engage the yeast ArfGAP, Glo3, with a low micromolar binding affinity. Calorimetry data demonstrate that both β'-COP propeller domains are required to bind Glo3. An acidic patch on β'-COP (D437/D450) interacts with Glo3 lysine residues located within the BoCCS (binding of coatomer, cargo, and SNAREs) region. Targeted point mutations in either Glo3 BoCCS or β'-COP abrogate the interaction in vitro, and loss of the β'-COP/Glo3 interaction drives Ste2 missorting to the vacuole and aberrant Golgi morphology in budding yeast. These data suggest that cells require the β'-COP/Glo3 interaction for cargo recycling via endosomes and the TGN, where β'-COP serves as a molecular platform to coordinate binding to multiple proteins, including Glo3, Arf1, and the COPI F-subcomplex.

Indexed as

Coatomer ProteinGTPase-Activating ProteinsSaccharomyces cerevisiae ProteinsADP-Ribosylation Factor 1Coat Protein Complex IGolgi ApparatusSaccharomyces cerevisiaeSNARE ProteinsADP-Ribosylation Factor 1Coatomer ProteinCoat Protein Complex IGlo3 protein, S cerevisiaeGTPase-Activating ProteinsSaccharomyces cerevisiae ProteinsSNARE Proteins

Identifiers

PMID36811888
PMCPMC9960064
OpenAlexW4321492109

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.