Evidence map›Paper›PMID 36809964›Full record

ArticleBMC genomics2023

Comparative transcriptome analysis reveals the regulatory mechanisms of two tropical water lilies in response to cold stress.

Xiangyu Ma, Qijiang Jin, Yanjie Wang, Xiaowen Wang, Xuelian Wang, Meihua Yang, Chunxiu Ye, Zhijuan Yang, Yingchun Xu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Xiangyu MaCollege of Horticulture, Key Laboratory of Landscape Agriculture, Ministry of Agriculture and Rural Affairs, East China Key Laboratory of Flower Biology, Key Laboratory of Flower Biology and Germplasm Creation, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, State Forestry and Grassland Administration, 210095, Nanjing, China.
Qijiang JinCollege of Horticulture, Key Laboratory of Landscape Agriculture, Ministry of Agriculture and Rural Affairs, East China Key Laboratory of Flower Biology, Key Laboratory of Flower Biology and Germplasm Creation, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, State Forestry and Grassland Administration, 210095, Nanjing, China.
Yanjie WangCollege of Horticulture, Key Laboratory of Landscape Agriculture, Ministry of Agriculture and Rural Affairs, East China Key Laboratory of Flower Biology, Key Laboratory of Flower Biology and Germplasm Creation, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, State Forestry and Grassland Administration, 210095, Nanjing, China.
Xiaowen WangCollege of Horticulture, Key Laboratory of Landscape Agriculture, Ministry of Agriculture and Rural Affairs, East China Key Laboratory of Flower Biology, Key Laboratory of Flower Biology and Germplasm Creation, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, State Forestry and Grassland Administration, 210095, Nanjing, China.
Xuelian WangCollege of Agriculture, Shihezi University, Shihezi, 832000, China.
Meihua YangCollege of Agriculture, Shihezi University, Shihezi, 832000, China.
Chunxiu YeCollege of Forestry and Horticulture, Xinjiang Agricultural University, Urumqi, 830052, China.
Zhijuan YangHainan University Sanya Nanfan Research Institute, Sanya, 572000, China.
Yingchun XuCollege of Horticulture, Key Laboratory of Landscape Agriculture, Ministry of Agriculture and Rural Affairs, East China Key Laboratory of Flower Biology, Key Laboratory of Flower Biology and Germplasm Creation, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, State Forestry and Grassland Administration, 210095, Nanjing, China. xyc@njau.edu.cn.
Ministry of Agriculture and Rural Affairs · CNNanjing Agricultural University · CNSanya University · CNShihezi University · CNState Forestry and Grassland Administration · CNXinjiang Agricultural University · CN

Funding

Fundamental Research Funds for Central Universities KYYJ201810,KYZ202107High-level Talent Project of the Natural Science Foundation of Hainan Province 321RC670National Natural Science Foundation of China U1803104;U2003113
6 · The paper itself

Abstract

backgroundTropical water lily is an aquatic plant with high ornamental value, but it cannot overwinter naturally at high latitudes. The temperature drop has become a key factor restricting the development and promotion of the industry.

resultsThe responses of Nymphaea lotus and Nymphaea rubra to cold stress were analyzed from the perspective of physiology and transcriptomics. Under the cold stress, Nymphaea rubra had obvious leaf edge curling and chlorosis. The degree of peroxidation of its membrane was higher than that of Nymphaea lotus, and the content of photosynthetic pigments also decreased more than that of Nymphaea lotus. The soluble sugar content, SOD enzyme activity and CAT enzyme activity of Nymphaea lotus were higher than those of Nymphaea rubra. This indicated that there were significant differences in the cold sensitivity of the two varieties. GO enrichment and KEGG pathway analysis showed that many stress response genes and pathways were affected and enriched to varying degrees under the cold stress, especially plant hormone signal transduction, metabolic pathways and some transcription factor genes were from ZAT gene family or WKRY gene family. The key transcription factor ZAT12 protein in the cold stress response process has a C

conclusionWe demonstrate that ethylene signalling and reactive oxygen species signalling play critical roles in the response of the two cultivars to cold stress. The key gene NlZAT12 for improving cold tolerance was identified. Our study provides a theoretical basis for revealing the molecular mechanism of tropical water lily in response to cold stress.

Indexed as

ArabidopsisNymphaeaNymphaeaceaeCold-Shock ResponseCold TemperatureGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsReactive Oxygen SpeciesSugarsTranscription FactorsTranscriptomePlant ProteinsReactive Oxygen SpeciesSugarsTranscription FactorsCold stressNlZAT12Phenotypic and physiological changesRNA-SeqWater Lily

Identifiers

PMID36809964
PMCPMC9945721
OpenAlexW4321447084

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.