Evidence map›Paper›PMID 36809491›Full record

ArticleJournal of molecular evolution2023

Non-random Codon Usage of Synonymous and Non-synonymous Mutations in the Human HLA-A Gene.

Tatsuo Matsushita, Tamiko Kano-Sueoka

Abstract read
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In one paragraph

Article in Journal of molecular evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Comparative analysis of codon usage patterns ofFrontiers in microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Tatsuo Matsushita, 1508 Fuqua Drive, Fort Collins, CO, 80521, USA. tatsym@yahoo.com.ORCID 0000-0003-3711-2623
Tamiko Kano-SueokaMolecular Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, 80309, USA.
University of Colorado Boulder · USYahoo (United Kingdom) · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure and function of human leucocyte antigen (HLA-A) is well known and is an extremely variable protein. From the public HLA-A database, we chose 26 high frequency HLA-A alleles (45% of sequenced alleles). Using five arbitrary references from these alleles, we analyzed synonymous mutations at the third codon position (sSNP

Indexed as

Codon UsageCytosineCodonHLA-A AntigensHumansMutationCodonCytosineHLA-A AntigensAncestral codonsDifferent deamination frequenciesHuman HLA-A geneNon-random sSNP3 mutationsNon-synonymous mutations (NSM)Variable polymorphic areas

Identifiers

PMID36809491
OpenAlexW4321435284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.